Aliases for ALG9-IT1 Gene

Data sources for ALG9-IT1 Gene:

RNA type for ALG9-IT1 Gene

lncRNA

Aliases for ALG9-IT1 Gene

External Ids for ALG9-IT1 Gene

Previous GeneCards Identifiers for ALG9-IT1 Gene

  • GC00U933848
  • GC11M111688

Summaries for ALG9-IT1 Gene

GeneCards Summary for ALG9-IT1 Gene

ALG9-IT1 (ALG9 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ALG9-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ALG9-IT1 Gene

Genomics for ALG9-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs


GeneHancers around ALG9-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ALG9-IT1 Gene

Latest Assembly
chr11:111,817,213-111,829,213
(GRCh38/hg38)
Size:
12,001 bases
Orientation:
Minus strand

Previous Assembly
chr11:111,687,938-111,699,936
(GRCh37/hg19 by Ensembl)
Size:
11,999 bases
Orientation:
Minus strand

Genomic View for ALG9-IT1 Gene

Genes around ALG9-IT1 on UCSC Golden Path with GeneCards custom track
ALG9-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ALG9-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALG9-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ALG9-IT1 Gene

Proteins for ALG9-IT1 Gene

Post-translational modifications for ALG9-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALG9-IT1 Gene

Domains & Families for ALG9-IT1 Gene

Gene Families for ALG9-IT1 Gene

genes like me logo Genes that share domains with ALG9-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ALG9-IT1 Gene

Function for ALG9-IT1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALG9-IT1 Gene

Localization for ALG9-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALG9-IT1 Gene

Pathways & Interactions for ALG9-IT1 Gene

PathCards logo

SuperPathways for ALG9-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ALG9-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ALG9-IT1 Gene

Drugs & Compounds for ALG9-IT1 Gene

No Compound Related Data Available

Transcripts for ALG9-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ALG9-IT1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000060D3B6_9606 lncRNA 684 4

Ensembl: ENST00000531305 (view in UCSC) ,

LncBook: HSALNT0181095,

LNCipedia: ALG9-IT1:1,

NONCODE: NONHSAT024158.2,

URS00009B1F09_9606 lncRNA 684 2

LncBook: HSALNT0181096,

NONCODE: NONHSAT160728.1,

URS0001BCE321_9606 lncRNA 684 1

LncBook: HSALNT0181096,

URS0001BE536B_9606 lncRNA 684 1

LncBook: HSALNT0181095,

ALG9-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ALG9-IT1 Gene

No ASD Table

Relevant External Links for ALG9-IT1 Gene

GeneLoc Exon Structure for
ALG9-IT1

No data available for mRNA/cDNA for ALG9-IT1 Gene

Expression for ALG9-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ALG9-IT1 Gene

genes like me logo Genes that share expression patterns with ALG9-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALG9-IT1 Gene

Orthologs for ALG9-IT1 Gene

Evolution for ALG9-IT1 Gene

ENSEMBL:
Gene Tree for ALG9-IT1 (if available)
TreeFam:
Gene Tree for ALG9-IT1 (if available)
Alliance of Genome Resources:
Additional Orthologs for ALG9-IT1

No data available for Orthologs for ALG9-IT1 Gene

Paralogs for ALG9-IT1 Gene

No data available for Paralogs for ALG9-IT1 Gene

Variants for ALG9-IT1 Gene

Additional Variant Information for ALG9-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALG9-IT1
Leiden Open Variation Database (LOVD)
ALG9-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ALG9-IT1 Gene

Disorders for ALG9-IT1 Gene

No disorders were found for ALG9-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ALG9-IT1 Gene

Publications for ALG9-IT1 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for ALG9-IT1 Gene

Sources for ALG9-IT1 Gene