Aliases for ALG9-IT1 Gene

Subcategory (RNA class) for ALG9-IT1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ALG9-IT1 Gene

  • ALG9 Intronic Transcript 1 2 3 5
  • ALG9 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • ALG9-IT1 2 170
  • HSALNG0087142 169
  • NONHSAG009602 94

External Ids for ALG9-IT1 Gene

Previous GeneCards Identifiers for ALG9-IT1 Gene

  • GC00U933848
  • GC11M111688

Summaries for ALG9-IT1 Gene

GeneCards Summary for ALG9-IT1 Gene

ALG9-IT1 (ALG9 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ALG9-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ALG9-IT1 Gene

Genomics for ALG9-IT1 Gene

GeneHancer (GH) Regulatory Elements for ALG9-IT1 Gene

Promoters and enhancers for ALG9-IT1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ALG9-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ALG9-IT1 Gene

Genomic Locations for ALG9-IT1 Gene
chr11:111,817,214-111,829,213
(GRCh38/hg38)
Size:
12,000 bases
Orientation:
Minus strand
chr11:111,687,938-111,699,936
(GRCh37/hg19)
Size:
11,999 bases
Orientation:
Minus strand

Genomic View for ALG9-IT1 Gene

Genes around ALG9-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALG9-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALG9-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ALG9-IT1 Gene

Proteins for ALG9-IT1 Gene

Post-translational modifications for ALG9-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALG9-IT1 Gene

Domains & Families for ALG9-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ALG9-IT1 Gene

Function for ALG9-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALG9-IT1 Gene

Localization for ALG9-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALG9-IT1 Gene

Pathways & Interactions for ALG9-IT1 Gene

PathCards logo

SuperPathways for ALG9-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ALG9-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALG9-IT1 Gene

Drugs & Compounds for ALG9-IT1 Gene

No Compound Related Data Available

Transcripts for ALG9-IT1 Gene

mRNA/cDNA for ALG9-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(2) LncBook transcripts :
(2) NONCODE transcripts :
(1) LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ALG9-IT1 Gene

No ASD Table

Relevant External Links for ALG9-IT1 Gene

GeneLoc Exon Structure for
ALG9-IT1
ECgene alternative splicing isoforms for
ALG9-IT1

Expression for ALG9-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ALG9-IT1 Gene

genes like me logo Genes that share expression patterns with ALG9-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALG9-IT1 Gene

Orthologs for ALG9-IT1 Gene

Evolution for ALG9-IT1 Gene

ENSEMBL:
Gene Tree for ALG9-IT1 (if available)
TreeFam:
Gene Tree for ALG9-IT1 (if available)

No data available for Orthologs for ALG9-IT1 Gene

Paralogs for ALG9-IT1 Gene

No data available for Paralogs for ALG9-IT1 Gene

Variants for ALG9-IT1 Gene

Additional Variant Information for ALG9-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALG9-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ALG9-IT1 Gene

Disorders for ALG9-IT1 Gene

No disorders were found for ALG9-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ALG9-IT1 Gene

Publications for ALG9-IT1 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 56

Products for ALG9-IT1 Gene

Sources for ALG9-IT1 Gene