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Aliases for ALG9-IT1 Gene

Subcategory (RNA class) for ALG9-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ALG9-IT1 Gene

  • ALG9 Intronic Transcript 1 2 3 5
  • ALG9 Intronic Transcript 1 (Non-Protein Coding) 2 3

External Ids for ALG9-IT1 Gene

Previous GeneCards Identifiers for ALG9-IT1 Gene

  • GC00U933848
  • GC11M111688

Summaries for ALG9-IT1 Gene

GeneCards Summary for ALG9-IT1 Gene

ALG9-IT1 (ALG9 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ALG9-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALG9-IT1 Gene

Genomics for ALG9-IT1 Gene

GeneHancer (GH) Regulatory Elements for ALG9-IT1 Gene

Promoters and enhancers for ALG9-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J111828 Enhancer 0.7 dbSUPER 650.7 -0.5 -534 1.5 PKNOX1 BACH1 EBF1 BMI1 BATF IRF4 ATF7 IKZF2 RUNX3 CREM ALG9-IT1 SIK2 BTG4 MIR34B MIR34C C11orf88 HSPB2 HSPB2-C11orf52 C11orf52 CRYAB
GH11J111844 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 0.4 -17.2 -17153 3.1 PKNOX1 MAX CEBPB FEZF1 JUND POLR2A FOS MYC ZBTB12 SP7 ALG9 PPP2R1B SIK2 C11orf1 FDXACB1 ENSG00000254980 ALG9-IT1 GNG5P3 ENSG00000258529
GH11J111814 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE dbSUPER 0.4 +14.2 14230 1.6 MEIS2 FOXP2 ALG9 PPP2R1B ENSG00000254980 ALG9-IT1 ENSG00000254990 ENSG00000258529
GH11J111841 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -12.3 -12297 0.7 ATF1 ARID4B SIN3A FEZF1 ZNF2 GATA2 ARID2 ZNF143 ATF7 RUNX3 ALG9-IT1 GNG5P3 ALG9 ENSG00000258529
GH11J111839 Enhancer 1.1 ENCODE dbSUPER 0.4 -10.9 -10924 0.7 ELF3 FOXA2 ARID4B DMAP1 RAD21 RARA ETS1 YY1 CREM THAP11 ALG9-IT1 GNG5P3 ALG9 ENSG00000258529
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ALG9-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ALG9-IT1 Gene

Genomic Locations for ALG9-IT1 Gene
chr11:111,817,214-111,829,212
(GRCh38/hg38)
Size:
11,999 bases
Orientation:
Minus strand
chr11:111,687,938-111,699,936
(GRCh37/hg19)
Size:
11,999 bases
Orientation:
Minus strand

Genomic View for ALG9-IT1 Gene

Genes around ALG9-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALG9-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALG9-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ALG9-IT1 Gene

Function for ALG9-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALG9-IT1 Gene

Localization for ALG9-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALG9-IT1 Gene

Pathways & Interactions for ALG9-IT1 Gene

SuperPathways for ALG9-IT1 Gene

No Data Available

Interacting Proteins for ALG9-IT1 Gene

Gene Ontology (GO) - Biological Process for ALG9-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALG9-IT1 Gene

Drugs & Compounds for ALG9-IT1 Gene

No Compound Related Data Available

Transcripts for ALG9-IT1 Gene

mRNA/cDNA for ALG9-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ALG9-IT1 Gene

No ASD Table

Relevant External Links for ALG9-IT1 Gene

GeneLoc Exon Structure for
ALG9-IT1
ECgene alternative splicing isoforms for
ALG9-IT1

Expression for ALG9-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ALG9-IT1 Gene

genes like me logo Genes that share expression patterns with ALG9-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALG9-IT1 Gene

Orthologs for ALG9-IT1 Gene

Evolution for ALG9-IT1 Gene

ENSEMBL:
Gene Tree for ALG9-IT1 (if available)
TreeFam:
Gene Tree for ALG9-IT1 (if available)

No data available for Orthologs for ALG9-IT1 Gene

Paralogs for ALG9-IT1 Gene

No data available for Paralogs for ALG9-IT1 Gene

Variants for ALG9-IT1 Gene

Additional Variant Information for ALG9-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALG9-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ALG9-IT1 Gene

Disorders for ALG9-IT1 Gene

No disorders were found for ALG9-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ALG9-IT1 Gene

Publications for ALG9-IT1 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58

Products for ALG9-IT1 Gene

Sources for ALG9-IT1 Gene

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