Aliases for ALG3P1 Gene

Aliases for ALG3P1 Gene

  • ALG3 Pseudogene 1 2 3 5
  • Asparagine-Linked Glycosylation 3, Alpha-1,3- Mannosyltransferase Homolog Pseudogene 3
  • ALG3, Alpha-1,3- Mannosyltransferase Pseudogene 1 3
  • NOT56L Pseudogene 3
  • ALG3P1 5

External Ids for ALG3P1 Gene

Summaries for ALG3P1 Gene

GeneCards Summary for ALG3P1 Gene

ALG3P1 (ALG3 Pseudogene 1) is a Pseudogene. Diseases associated with ALG3P1 include Congenital Disorder Of Glycosylation, Type Id.

Additional gene information for ALG3P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ALG3P1 Gene

Genomics for ALG3P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ALG3P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J005376 Enhancer 0.3 FANTOM5 600.7 +0.3 327 0.4 CREB1 ALG3P1 ICE1 LOC101929200 HSALNG0039827 ADAMTS16
GH05J005374 Enhancer 0.8 Ensembl ENCODE 0.7 +3.1 3117 2.3 RFX1 MGA FOSL1 NFIC TAL1 ATF3 TCF12 ATF1 L3MBTL2 ZNF354B ICE1 ALG3P1 LOC101929200 HSALNG0039827 ADAMTS16
GH05J005359 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 +16.1 16078 2.1 CREB1 GATAD2A TFE3 SOX13 NFKBIZ RCOR2 RXRB IRF2 SP1 CEBPA ALG3P1 ICE1 LOC101929200 HSALNG0039827 ADAMTS16
GH05J005349 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 +25.9 25895 2.7 GATAD2A PRDM10 ZNF629 ZNF692 RCOR2 ZNF174 JUND ZIC2 PKNOX1 RXRB ICE1 ALG3P1 HSALNG0039827 LOC101929200 ADAMTS16
GH05J005339 Enhancer 1.1 Ensembl ENCODE 0.3 +34.7 34743 5.4 GATAD2A CTCF TEAD4 PRDM10 ZNF629 IKZF1 ZNF692 JUND ZIC2 ZSCAN4 LINC02145 ICE1 ALG3P1 HSALNG0039827 LOC101929200 ADAMTS16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ALG3P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ALG3P1 Gene

Genomic Locations for ALG3P1 Gene
chr5:5,375,632-5,376,844
(GRCh38/hg38)
Size:
1,213 bases
Orientation:
Minus strand
chr5:5,375,745-5,376,957
(GRCh37/hg19)
Size:
1,213 bases
Orientation:
Minus strand

Genomic View for ALG3P1 Gene

Genes around ALG3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALG3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALG3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALG3P1 Gene

Proteins for ALG3P1 Gene

Post-translational modifications for ALG3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALG3P1 Gene

Domains & Families for ALG3P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ALG3P1 Gene

Function for ALG3P1 Gene

Phenotypes From GWAS Catalog for ALG3P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALG3P1 Gene

Localization for ALG3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALG3P1 Gene

Pathways & Interactions for ALG3P1 Gene

PathCards logo

SuperPathways for ALG3P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ALG3P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ALG3P1 Gene

Drugs & Compounds for ALG3P1 Gene

No Compound Related Data Available

Transcripts for ALG3P1 Gene

mRNA/cDNA for ALG3P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ALG3P1 Gene

No ASD Table

Relevant External Links for ALG3P1 Gene

GeneLoc Exon Structure for
ALG3P1

Expression for ALG3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ALG3P1 Gene

mRNA differential expression in normal tissues according to GTEx for ALG3P1 Gene

This gene is overexpressed in Brain - Cerebellum (x8.4), Brain - Cerebellar Hemisphere (x6.9), and Testis (x5.1).
genes like me logo Genes that share expression patterns with ALG3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALG3P1 Gene

Orthologs for ALG3P1 Gene

Evolution for ALG3P1 Gene

ENSEMBL:
Gene Tree for ALG3P1 (if available)
TreeFam:
Gene Tree for ALG3P1 (if available)

No data available for Orthologs for ALG3P1 Gene

Paralogs for ALG3P1 Gene

No data available for Paralogs for ALG3P1 Gene

Variants for ALG3P1 Gene

Additional Variant Information for ALG3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALG3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ALG3P1 Gene

Disorders for ALG3P1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ALG3P1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
congenital disorder of glycosylation, type id
  • cdg1d
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ALG3P1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ALG3P1 Gene

Publications for ALG3P1 Gene

  1. An activated 5' cryptic splice site in the human ALG3 gene generates a premature termination codon insensitive to nonsense-mediated mRNA decay in a new case of congenital disorder of glycosylation type Id (CDG-Id). (PMID: 15108280) Denecke J … Marquardt T (Human mutation 2004) 3

No data available for Mastermind for ALG3P1 Gene

Products for ALG3P1 Gene

Sources for ALG3P1 Gene