Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ALG1L9P Gene

Aliases for ALG1L9P Gene

  • Asparagine-Linked Glycosylation 1-Like 9, Pseudogene 2 3 5
  • Asparagine-Linked Glycosylation 1 Homolog Pseudogene 3
  • Beta-1,4-Mannosyltransferase Pseudogene 3

External Ids for ALG1L9P Gene

Previous GeneCards Identifiers for ALG1L9P Gene

  • GC11M071513

Summaries for ALG1L9P Gene

GeneCards Summary for ALG1L9P Gene

ALG1L9P (Asparagine-Linked Glycosylation 1-Like 9, Pseudogene) is a Pseudogene.

Additional gene information for ALG1L9P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALG1L9P Gene

Genomics for ALG1L9P Gene

GeneHancer (GH) Regulatory Elements for ALG1L9P Gene

Promoters and enhancers for ALG1L9P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J072811 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 19.9 -996.0 -995972 5.5 HDGF PKNOX1 CLOCK FOXA2 SMAD1 MLX ARNT ZFP64 ARID4B SIN3A ATG16L2 STARD10 ALG1L9P NUMA1 LOC100128494 LOC105369379 ENSG00000255672 ENSG00000256739 LOC220077 LOC401703
GH11J072430 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.7 -614.7 -614689 4.7 ZFP64 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 ZC3H11A ZNF610 ZNF585B CLPB NUMA1 LOC100128494 ZNF705E RNF121 IL18BP NADSYN1 FAM86C1 ENSG00000255672 ENSG00000256739
GH11J071446 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 9.9 +367.2 367182 8.5 HDGF PKNOX1 CLOCK FOXA2 ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC30A9 NADSYN1 DHCR7 ENSG00000254682 NUMA1 LOC100128494 ZNF705E IL18BP ALG1L9P
GH11J071704 Enhancer 1.1 Ensembl ENCODE 4.8 +110.1 110071 7.5 PKNOX1 ARNT TCF12 ZFP91 ATF7 NCOA1 ZNF592 ATF4 RFX3 GMEB1 FAM86C1 FOLR3 ALG1L9P ENSG00000254682 KRTAP5-9 ENPP7P8 ENSG00000254972 LOC645544
GH11J071813 Promoter/Enhancer 1.3 Ensembl ENCODE 0.7 +4.4 4396 1.3 RB1 SIN3A RAD21 ZNF335 GLIS2 ARID2 ZNF143 SMARCA5 ZNF654 ZBTB11 FAM86C1 ALG1L9P ZNF705E
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ALG1L9P on UCSC Golden Path with GeneCards custom track

Genomic Locations for ALG1L9P Gene

Genomic Locations for ALG1L9P Gene
chr11:71,794,363-71,818,238
(GRCh38/hg38)
Size:
23,876 bases
Orientation:
Minus strand
chr11:71,511,277-71,515,701
(GRCh37/hg19)
Size:
4,425 bases
Orientation:
Minus strand

Genomic View for ALG1L9P Gene

Genes around ALG1L9P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALG1L9P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALG1L9P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALG1L9P Gene

Function for ALG1L9P Gene

Phenotypes From GWAS Catalog for ALG1L9P Gene

Phenotypes for ALG1L9P Gene

GenomeRNAi human phenotypes for ALG1L9P:
genes like me logo Genes that share phenotypes with ALG1L9P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALG1L9P Gene

Localization for ALG1L9P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALG1L9P Gene

Pathways & Interactions for ALG1L9P Gene

SuperPathways for ALG1L9P Gene

No Data Available

Interacting Proteins for ALG1L9P Gene

Gene Ontology (GO) - Biological Process for ALG1L9P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALG1L9P Gene

Drugs & Compounds for ALG1L9P Gene

No Compound Related Data Available

Transcripts for ALG1L9P Gene

mRNA/cDNA for ALG1L9P Gene

(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ALG1L9P Gene

Asparagine-linked glycosylation 1-like 9, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ALG1L9P Gene

No ASD Table

Relevant External Links for ALG1L9P Gene

GeneLoc Exon Structure for
ALG1L9P
ECgene alternative splicing isoforms for
ALG1L9P

Expression for ALG1L9P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ALG1L9P Gene

NURSA nuclear receptor signaling pathways regulating expression of ALG1L9P Gene:

ALG1L9P

SOURCE GeneReport for Unigene cluster for ALG1L9P Gene:

Hs.657094
genes like me logo Genes that share expression patterns with ALG1L9P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALG1L9P Gene

Orthologs for ALG1L9P Gene

Evolution for ALG1L9P Gene

ENSEMBL:
Gene Tree for ALG1L9P (if available)
TreeFam:
Gene Tree for ALG1L9P (if available)

No data available for Orthologs for ALG1L9P Gene

Paralogs for ALG1L9P Gene

No data available for Paralogs for ALG1L9P Gene

Variants for ALG1L9P Gene

Sequence variations from dbSNP and Humsavar for ALG1L9P Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000153538 -- 71,794,974(-) T/C/G genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000209547 -- 71,813,569(-) C/T non_coding_transcript_variant
rs1000781519 -- 71,805,944(-) G/A genic_downstream_transcript_variant, intron_variant
rs1000989538 -- 71,810,531(-) C/T intron_variant, non_coding_transcript_variant
rs1001215433 -- 71,812,571(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ALG1L9P Gene

Variant ID Type Subtype PubMed ID
dgv1222n100 CNV gain 25217958
dgv1223n100 CNV gain 25217958
dgv1224n100 CNV gain 25217958
dgv223e199 CNV deletion 23128226
esv25167 CNV gain 19812545
esv2744758 CNV deletion 23290073
esv2759836 CNV gain+loss 17122850
esv2760190 CNV loss 21179565
esv2761682 CNV gain 21179565
esv3892025 CNV gain 25118596
nsv1045511 CNV loss 25217958
nsv1127207 CNV deletion 24896259
nsv428262 CNV gain+loss 18775914
nsv482161 CNV gain 20164927
nsv832205 CNV gain 17160897
nsv8837 CNV gain+loss 18304495
nsv951036 CNV deletion 24416366
nsv972041 CNV duplication 23825009

Additional Variant Information for ALG1L9P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALG1L9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ALG1L9P Gene

Disorders for ALG1L9P Gene

Additional Disease Information for ALG1L9P

No disorders were found for ALG1L9P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALG1L9P Gene

Publications for ALG1L9P Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ALG1L9P Gene

Sources for ALG1L9P Gene

Content
Loading form....