Aliases for ALG14-AS1 Gene

Subcategory (RNA class) for ALG14-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ALG14-AS1 Gene

  • ALG14 Antisense RNA 1 2 3 5
  • ALG14-AS1 2 5
  • NONHSAG002135.2 91
  • HSALNG0005351 164
  • Lnc-TMEM56-2 165

External Ids for ALG14-AS1 Gene

Summaries for ALG14-AS1 Gene

GeneCards Summary for ALG14-AS1 Gene

ALG14-AS1 (ALG14 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ALG14-AS1 include Myasthenic Syndrome, Congenital, 15.

Additional gene information for ALG14-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ALG14-AS1 Gene

Genomics for ALG14-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ALG14-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ALG14-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ALG14-AS1 Gene

Genomic Locations for ALG14-AS1 Gene
chr1:95,061,596-95,067,546
(GRCh38/hg38)
Size:
5,951 bases
Orientation:
Plus strand
chr1:95,527,152-95,533,101
(GRCh37/hg19)
Size:
5,950 bases
Orientation:
Plus strand

Genomic View for ALG14-AS1 Gene

Genes around ALG14-AS1 on UCSC Golden Path with GeneCards custom track
ALG14-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ALG14-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALG14-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALG14-AS1 Gene

Proteins for ALG14-AS1 Gene

Post-translational modifications for ALG14-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALG14-AS1 Gene

Domains & Families for ALG14-AS1 Gene

Gene Families for ALG14-AS1 Gene

genes like me logo Genes that share domains with ALG14-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ALG14-AS1 Gene

Function for ALG14-AS1 Gene

Phenotypes From GWAS Catalog for ALG14-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALG14-AS1 Gene

Localization for ALG14-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALG14-AS1 Gene

Pathways & Interactions for ALG14-AS1 Gene

PathCards logo

SuperPathways for ALG14-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ALG14-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ALG14-AS1 Gene

Drugs & Compounds for ALG14-AS1 Gene

No Compound Related Data Available

Transcripts for ALG14-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ALG14-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004442D7_9606 lncRNA 1096 3

Ensembl: ENST00000451611 (view in UCSC) ,

LNCipedia: lnc-TMEM56-2:1,

NONCODE: NONHSAT004639.2,

URS00008E3992_9606 lncRNA 1096 2

HGNC: 41192,

RefSeq: NR_132786,

URS00009AE55B_9606 lncRNA 1096 2

LncBook: HSALNT0011026,

NONCODE: NONHSAT149388.1,

ALG14-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ALG14-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ALG14-AS1 Gene

No ASD Table

Relevant External Links for ALG14-AS1 Gene

GeneLoc Exon Structure for
ALG14-AS1

Expression for ALG14-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ALG14-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALG14-AS1 Gene

Orthologs for ALG14-AS1 Gene

Evolution for ALG14-AS1 Gene

ENSEMBL:
Gene Tree for ALG14-AS1 (if available)
TreeFam:
Gene Tree for ALG14-AS1 (if available)

No data available for Orthologs for ALG14-AS1 Gene

Paralogs for ALG14-AS1 Gene

No data available for Paralogs for ALG14-AS1 Gene

Variants for ALG14-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ALG14-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
842849 Uncertain Significance: Myasthenic syndrome, congenital, 15 95,064,909(+) T/C MISSENSE_VARIANT
rs12751061 Benign: not specified 95,065,035(+) A/T INTRON_VARIANT
rs138996965 Uncertain Significance: Myasthenic syndrome, congenital, 15 95,064,972(+) T/C MISSENSE_VARIANT
rs139758313 Uncertain Significance: not provided 95,065,014(+) C/A MISSENSE_VARIANT
rs141065009 Benign: Myasthenic syndrome, congenital, 15 95,064,983(+) C/T SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for ALG14-AS1 Gene

Additional Variant Information for ALG14-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALG14-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ALG14-AS1 Gene

Disorders for ALG14-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ALG14-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
myasthenic syndrome, congenital, 15
  • cms15
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ALG14-AS1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ALG14-AS1 Gene

Publications for ALG14-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

No data available for Mastermind for ALG14-AS1 Gene

Products for ALG14-AS1 Gene

Sources for ALG14-AS1 Gene