Aliases for ALDH1L1-AS2 Gene

Subcategory (RNA class) for ALDH1L1-AS2 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ALDH1L1-AS2 Gene

  • ALDH1L1 Antisense RNA 2 2 3 5
  • ALDH1L1-AS2 2 5 165
  • ALDH1L1 Antisense RNA 2 (Non-Protein Coding) 2 3
  • NONHSAG035965.2 91
  • HSALNG0028665 164

External Ids for ALDH1L1-AS2 Gene

Previous GeneCards Identifiers for ALDH1L1-AS2 Gene

  • GC00U933052
  • GC03P125898

Summaries for ALDH1L1-AS2 Gene

GeneCards Summary for ALDH1L1-AS2 Gene

ALDH1L1-AS2 (ALDH1L1 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ALDH1L1-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ALDH1L1-AS2 Gene

Genomics for ALDH1L1-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ALDH1L1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J126178 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 605.1 +0.2 220 3.6 HNRNPL GATAD2A RBFOX2 RXRB IRF2 BRD4 SP1 SCRT2 KMT2B TAF1 ALDH1L1-AS2 RF00017-4102 ALDH1L1 KLF15 SLC41A3
GH03J126266 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 7 +87.7 87703 3.8 CREB1 GATAD2A ATF7 TEAD4 ZNF629 TFE3 KDM1A JUND RBFOX2 IRF2 ENSG00000250934 ALDH1L1 KLF15 CCDC37-DT CFAP100 ALDH1L1-AS2 ENPP7P4 lnc-KLF15-3
GH03J126207 Enhancer 1 Ensembl ENCODE 6.8 +28.5 28468 2.2 ZNF629 RFX1 ZNF692 JUND ZIC2 PATZ1 GABPA ZNF600 ZNF341 SCRT2 KLF15 ALDH1L1-AS2 ALDH1L1 ENSG00000287232 piR-50444-320
GH03J126184 Enhancer 0.9 Ensembl ENCODE 5.2 +4.8 4810 1.5 RXRB SP1 FOXJ2 SOX13 TCF7 NFE2 FOXA2 ZNF316 MAFF ATF3 ALDH1L1 ALDH1L1-AS2 SLC41A3
GH03J126198 Enhancer 0.7 ENCODE 6.1 +18.5 18479 0.4 GATAD2A CTCF REST ZNF143 RAD21 IRF2 SP1 FOXJ2 ZNF766 HMBOX1 ALDH1L1 piR-50444-320 ALDH1L1-AS2 KLF15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ALDH1L1-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ALDH1L1-AS2 Gene

Genomic Locations for ALDH1L1-AS2 Gene
chr3:126,180,012-126,210,170
(GRCh38/hg38)
Size:
30,159 bases
Orientation:
Plus strand
chr3:125,898,908-125,929,012
(GRCh37/hg19)
Size:
30,105 bases
Orientation:
Plus strand

Genomic View for ALDH1L1-AS2 Gene

Genes around ALDH1L1-AS2 on UCSC Golden Path with GeneCards custom track
ALDH1L1-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ALDH1L1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALDH1L1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALDH1L1-AS2 Gene

Proteins for ALDH1L1-AS2 Gene

Post-translational modifications for ALDH1L1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALDH1L1-AS2 Gene

Domains & Families for ALDH1L1-AS2 Gene

Gene Families for ALDH1L1-AS2 Gene

genes like me logo Genes that share domains with ALDH1L1-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ALDH1L1-AS2 Gene

Function for ALDH1L1-AS2 Gene

Phenotypes From GWAS Catalog for ALDH1L1-AS2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALDH1L1-AS2 Gene

Localization for ALDH1L1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALDH1L1-AS2 Gene

Pathways & Interactions for ALDH1L1-AS2 Gene

PathCards logo

SuperPathways for ALDH1L1-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ALDH1L1-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ALDH1L1-AS2 Gene

Drugs & Compounds for ALDH1L1-AS2 Gene

No Compound Related Data Available

Transcripts for ALDH1L1-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ALDH1L1-AS2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000049B9A0_9606 lncRNA 2324 4

Ensembl: ENST00000500232 (view in UCSC) ,

LncBook: HSALNT0059963,

LNCipedia: ALDH1L1-AS2:1,

NONCODE: NONHSAT091649.2,

URS0000407E22_9606 lncRNA 2236 4

Ensembl: ENST00000500525 (view in UCSC) ,

LncBook: HSALNT0059969,

LNCipedia: ALDH1L1-AS2:4,

NONCODE: NONHSAT091651.2,

URS00004E84A5_9606 lncRNA 466 4

Ensembl: ENST00000502278 (view in UCSC) ,

LncBook: HSALNT0059967,

LNCipedia: ALDH1L1-AS2:6, ALDH1L1-AS2:3,

NONCODE: NONHSAT091650.2,

URS000075DB32_9606 lncRNA 2323 2

HGNC: 42446,

RefSeq: NR_046383,

URS0000EF6321_9606 lncRNA 2363 1

Ensembl: ENST00000654154 (view in UCSC) ,

ALDH1L1-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ALDH1L1-AS2 Gene

4 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ALDH1L1-AS2 Gene

No ASD Table

Relevant External Links for ALDH1L1-AS2 Gene

GeneLoc Exon Structure for
ALDH1L1-AS2

Expression for ALDH1L1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ALDH1L1-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for ALDH1L1-AS2 Gene

This gene is overexpressed in Heart - Left Ventricle (x4.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ALDH1L1-AS2

SOURCE GeneReport for Unigene cluster for ALDH1L1-AS2 Gene:

Hs.633362
genes like me logo Genes that share expression patterns with ALDH1L1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALDH1L1-AS2 Gene

Orthologs for ALDH1L1-AS2 Gene

Evolution for ALDH1L1-AS2 Gene

ENSEMBL:
Gene Tree for ALDH1L1-AS2 (if available)
TreeFam:
Gene Tree for ALDH1L1-AS2 (if available)

No data available for Orthologs for ALDH1L1-AS2 Gene

Paralogs for ALDH1L1-AS2 Gene

No data available for Paralogs for ALDH1L1-AS2 Gene

Variants for ALDH1L1-AS2 Gene

Additional dbSNP identifiers (rs#s) for ALDH1L1-AS2 Gene

Structural Variations from Database of Genomic Variants (DGV) for ALDH1L1-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv8545n54 CNV loss 21841781
esv3305167 CNV mobile element insertion 20981092
esv3308825 CNV mobile element insertion 20981092
esv3405792 CNV insertion 20981092
esv3442040 CNV insertion 20981092
esv3597677 CNV loss 21293372
nsv1007256 CNV gain 25217958
nsv3985 CNV deletion 18451855

Additional Variant Information for ALDH1L1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALDH1L1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ALDH1L1-AS2 Gene

Disorders for ALDH1L1-AS2 Gene

No disorders were found for ALDH1L1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALDH1L1-AS2 Gene

Publications for ALDH1L1-AS2 Gene

  1. Genome-wide meta-analysis of homocysteine and methionine metabolism identifies five one carbon metabolism loci and a novel association of ALDH1L1 with ischemic stroke. (PMID: 24651765) Williams SR … Framingham Heart Study (PLoS genetics 2014) 3
  2. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X … REDSII Chagas Study Group from the NHLBI Retrovirus Epidemiology Donor Study-II Component International (PloS one 2013) 3
  3. Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes. (PMID: 23378610) Xie W … Walker M (Diabetes 2013) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for ALDH1L1-AS2 Gene

Sources for ALDH1L1-AS2 Gene