Aliases for ALDH1L1-AS1 Gene

Subcategory (RNA class) for ALDH1L1-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ALDH1L1-AS1 Gene

  • ALDH1L1 Antisense RNA 1 2 3 5
  • ALDH1L1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ALDH1L1-AS1 2 5
  • NONHSAG035963.2 91
  • HSALNG0028664 164

External Ids for ALDH1L1-AS1 Gene

Previous GeneCards Identifiers for ALDH1L1-AS1 Gene

  • GC00U933474
  • GC03P125823

Summaries for ALDH1L1-AS1 Gene

GeneCards Summary for ALDH1L1-AS1 Gene

ALDH1L1-AS1 (ALDH1L1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ALDH1L1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ALDH1L1-AS1 Gene

Genomics for ALDH1L1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ALDH1L1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J126099 Enhancer 0.8 Ensembl ENCODE 611.9 -2.0 -1974 3.5 CEBPG ZIC2 CEBPA CEBPB RUNX3 TCF12 BCL11A WT1 NR2F1 JUNB SLC41A3 ALDH1L1-AS1 FAM86JP ALG1L ROPN1B LINC02614 LOC112267887 ALDH1L1
GH03J126103 Enhancer 0.5 Ensembl 600.7 +0.1 61 0.2 CEBPG CEBPA CEBPB CTCF IRF9 ALDH1L1-AS1 SLC41A3 lnc-SLC41A3-1 ALDH1L1
GH03J126055 Enhancer 1 Ensembl ENCODE 10.8 -45.7 -45681 4.1 HNRNPL GATAD2A NFKBIZ RCOR2 RXRB REST IRF2 SOX13 NONO SMARCC1 ENSG00000248607 ALG1L FAM86JP SLC41A3 ALDH1L1-AS1 OR7E29P piR-38257-012
GH03J125972 Promoter 0.7 CraniofacialAtlas 10.9 -131.5 -131482 0.4 CREB1 TARDBP CTCF TRIM22 EZH2 ZFHX2 ZNF18 EGR2 SLC41A3 ALDH1L1-AS1 ROPN1B lnc-ROPN1B-15 ALG1L
GH03J126013 Enhancer 0.5 Ensembl 11 -89.3 -89339 1.8 TEAD4 JUND YY1 POLR2A FOS SMARCA4 REST EGR1 ALG1L FAM86JP SLC41A3 ROPN1B ALDH1L1-AS1 lnc-ALG1L-3 ENSG00000248607
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ALDH1L1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ALDH1L1-AS1 Gene

Genomic Locations for ALDH1L1-AS1 Gene
chr3:126,103,640-126,108,070
(GRCh38/hg38)
Size:
4,431 bases
Orientation:
Plus strand
chr3:125,822,483-125,826,912
(GRCh37/hg19)
Size:
4,430 bases
Orientation:
Plus strand

Genomic View for ALDH1L1-AS1 Gene

Genes around ALDH1L1-AS1 on UCSC Golden Path with GeneCards custom track
ALDH1L1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ALDH1L1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALDH1L1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALDH1L1-AS1 Gene

Proteins for ALDH1L1-AS1 Gene

Post-translational modifications for ALDH1L1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALDH1L1-AS1 Gene

Domains & Families for ALDH1L1-AS1 Gene

Gene Families for ALDH1L1-AS1 Gene

genes like me logo Genes that share domains with ALDH1L1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ALDH1L1-AS1 Gene

Function for ALDH1L1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALDH1L1-AS1 Gene

Localization for ALDH1L1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALDH1L1-AS1 Gene

Pathways & Interactions for ALDH1L1-AS1 Gene

PathCards logo

SuperPathways for ALDH1L1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ALDH1L1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ALDH1L1-AS1 Gene

Drugs & Compounds for ALDH1L1-AS1 Gene

No Compound Related Data Available

Transcripts for ALDH1L1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ALDH1L1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000025E490_9606 lncRNA 437 5

HGNC: 40244,

RefSeq: NR_046602,

Ensembl: ENST00000512384 (view in UCSC) ,

LncBook: HSALNT0059960,

NONCODE: NONHSAT091647.2,

URS00009B83AD_9606 lncRNA 437 2

LncBook: HSALNT0059961,

NONCODE: NONHSAT194419.1,

ALDH1L1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ALDH1L1-AS1 Gene

No ASD Table

Relevant External Links for ALDH1L1-AS1 Gene

GeneLoc Exon Structure for
ALDH1L1-AS1

No data available for mRNA/cDNA for ALDH1L1-AS1 Gene

Expression for ALDH1L1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ALDH1L1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ALDH1L1-AS1 Gene

This gene is overexpressed in Liver (x6.0).

SOURCE GeneReport for Unigene cluster for ALDH1L1-AS1 Gene:

Hs.742339
genes like me logo Genes that share expression patterns with ALDH1L1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALDH1L1-AS1 Gene

Orthologs for ALDH1L1-AS1 Gene

Evolution for ALDH1L1-AS1 Gene

ENSEMBL:
Gene Tree for ALDH1L1-AS1 (if available)
TreeFam:
Gene Tree for ALDH1L1-AS1 (if available)

No data available for Orthologs for ALDH1L1-AS1 Gene

Paralogs for ALDH1L1-AS1 Gene

No data available for Paralogs for ALDH1L1-AS1 Gene

Variants for ALDH1L1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ALDH1L1-AS1 Gene

SNP ID Clinical significance and condition Chr 03 pos Variation AA Info Type
713087 Benign: not provided 126,107,135(+) C/T INTRON_VARIANT
784021 Benign: not provided 126,105,876(+) C/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for ALDH1L1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ALDH1L1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv8545n54 CNV loss 21841781
esv2725864 CNV deletion 23290073
esv7912 OTHER inversion 19470904
nsv1011457 CNV gain 25217958
nsv520037 CNV gain+loss 19592680
nsv524971 CNV loss 19592680
nsv591465 CNV gain 21841781
nsv829716 CNV gain+loss 17160897
nsv955334 CNV deletion 24416366

Additional Variant Information for ALDH1L1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALDH1L1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ALDH1L1-AS1 Gene

Disorders for ALDH1L1-AS1 Gene

Additional Disease Information for ALDH1L1-AS1

No disorders were found for ALDH1L1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALDH1L1-AS1 Gene

Publications for ALDH1L1-AS1 Gene

No publications were found for ALDH1L1-AS1 Gene.

Products for ALDH1L1-AS1 Gene

Sources for ALDH1L1-AS1 Gene