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Aliases for ALDH1L1-AS1 Gene

Subcategory (RNA class) for ALDH1L1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ALDH1L1-AS1 Gene

  • ALDH1L1 Antisense RNA 1 2 3 5
  • ALDH1L1 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for ALDH1L1-AS1 Gene

Previous GeneCards Identifiers for ALDH1L1-AS1 Gene

  • GC00U933474
  • GC03P125823

Summaries for ALDH1L1-AS1 Gene

GeneCards Summary for ALDH1L1-AS1 Gene

ALDH1L1-AS1 (ALDH1L1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ALDH1L1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALDH1L1-AS1 Gene

Genomics for ALDH1L1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ALDH1L1-AS1 Gene

Promoters and enhancers for ALDH1L1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J126102 Enhancer 0.2 ENCODE 650.7 -1.0 -967 0.2 ALDH1L1-AS1 SLC41A3 ROPN1B
GH03J126055 Enhancer 1.1 Ensembl ENCODE 10.8 -45.7 -45681 4.1 ARID4B BRCA1 ZNF48 ATF7 NFKBIZ SP5 REST SMARCB1 KAT8 NFIL3 ENSG00000248607 ALG1L FAM86JP SLC41A3 ALDH1L1-AS1 OR7E29P LOC105374085
GH03J125972 Enhancer 0.6 Ensembl 10.9 -131.1 -131145 0.6 CTCF ZNF654 TRIM22 RAD21 ZFP69B ZNF335 ZFHX2 ZNF692 TARDBP SMC3 SLC41A3 ALDH1L1-AS1 FAM86JP ROPN1B PIR42058
GH03J126132 Enhancer 0.3 ENCODE 12.5 +29.4 29353 0.1 CTCF ALDH1L1-AS1 ALDH1L1 GC03P126153
GH03J126129 Enhancer 0.6 ENCODE 0.3 +26.1 26053 0.2 E2F1 MTA1 MAX SMC3 CEBPB RCOR1 RAD21 NR2F2 ROPN1B GC03P126153 ALDH1L1-AS1 ALDH1L1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ALDH1L1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ALDH1L1-AS1 Gene

Genomic Locations for ALDH1L1-AS1 Gene
chr3:126,103,640-126,108,069
(GRCh38/hg38)
Size:
4,430 bases
Orientation:
Plus strand
chr3:125,822,483-125,826,912
(GRCh37/hg19)
Size:
4,430 bases
Orientation:
Plus strand

Genomic View for ALDH1L1-AS1 Gene

Genes around ALDH1L1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALDH1L1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALDH1L1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALDH1L1-AS1 Gene

Proteins for ALDH1L1-AS1 Gene

Post-translational modifications for ALDH1L1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALDH1L1-AS1 Gene

Domains & Families for ALDH1L1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ALDH1L1-AS1 Gene

Function for ALDH1L1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALDH1L1-AS1 Gene

Localization for ALDH1L1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALDH1L1-AS1 Gene

Pathways & Interactions for ALDH1L1-AS1 Gene

SuperPathways for ALDH1L1-AS1 Gene

No Data Available

Interacting Proteins for ALDH1L1-AS1 Gene

Gene Ontology (GO) - Biological Process for ALDH1L1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALDH1L1-AS1 Gene

Drugs & Compounds for ALDH1L1-AS1 Gene

No Compound Related Data Available

Transcripts for ALDH1L1-AS1 Gene

mRNA/cDNA for ALDH1L1-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for ALDH1L1-AS1 Gene

ALDH1L1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ALDH1L1-AS1 Gene

No ASD Table

Relevant External Links for ALDH1L1-AS1 Gene

GeneLoc Exon Structure for
ALDH1L1-AS1
ECgene alternative splicing isoforms for
ALDH1L1-AS1

Expression for ALDH1L1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ALDH1L1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ALDH1L1-AS1 Gene

This gene is overexpressed in Liver (x6.0).

SOURCE GeneReport for Unigene cluster for ALDH1L1-AS1 Gene:

Hs.742339
genes like me logo Genes that share expression patterns with ALDH1L1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALDH1L1-AS1 Gene

Orthologs for ALDH1L1-AS1 Gene

Evolution for ALDH1L1-AS1 Gene

ENSEMBL:
Gene Tree for ALDH1L1-AS1 (if available)
TreeFam:
Gene Tree for ALDH1L1-AS1 (if available)

No data available for Orthologs for ALDH1L1-AS1 Gene

Paralogs for ALDH1L1-AS1 Gene

No data available for Paralogs for ALDH1L1-AS1 Gene

Variants for ALDH1L1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ALDH1L1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000641907 -- 126,102,630(+) T/C upstream_transcript_variant
rs1000803135 -- 126,107,497(+) G/C intron_variant
rs1001243374 -- 126,106,604(+) G/C intron_variant
rs1002209275 -- 126,106,598(+) C/G intron_variant
rs1003190576 -- 126,105,302(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ALDH1L1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv8545n54 CNV loss 21841781
esv2725864 CNV deletion 23290073
esv7912 OTHER inversion 19470904
nsv1011457 CNV gain 25217958
nsv955334 CNV deletion 24416366
nsv829716 CNV gain+loss 17160897
nsv591465 CNV gain 21841781
nsv524971 CNV loss 19592680
nsv520037 CNV gain+loss 19592680

Additional Variant Information for ALDH1L1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALDH1L1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ALDH1L1-AS1 Gene

Disorders for ALDH1L1-AS1 Gene

Additional Disease Information for ALDH1L1-AS1

No disorders were found for ALDH1L1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALDH1L1-AS1 Gene

Publications for ALDH1L1-AS1 Gene

No publications were found for ALDH1L1-AS1 Gene.

Products for ALDH1L1-AS1 Gene

Sources for ALDH1L1-AS1 Gene

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