AJ009638 Gene (RNA Gene)

 

GC11P093778
GIFtS:
3
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Aliases for AJ009638 Gene

Subcategory (RNA class) for AJ009638 Gene

snRNA

Number of RNA Genes sources:

1 / 17

Aliases for AJ009638 Gene

No Aliases found

Previous GeneCards Identifiers for AJ009638 Gene

  • GC11P093760
  • GC11P093769

No data available for External Ids for AJ009638 Gene

Summaries for AJ009638 Gene

GeneCards Summary for AJ009638 Gene

AJ009638 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for AJ009638 Gene

  • Small nucleolar RNA U2-30

Additional gene information for AJ009638 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for AJ009638 Gene

Genomics for AJ009638 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for AJ009638 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J093721 Promoter 0.3 EPDnew 600.7 -0.3 -296 0.1 AJ009638 BK005567 ENSG00000199875 ENSG00000273885 ENSG00000275146 SCARNA9 C11orf54 CEP295
GH11J093728 Enhancer 0.5 ENCODE 0.4 +6.7 6673 0.2 POLR2A BCLAF1 RBM22 SUPT5H ATF2 NFATC1 ZBED1 ENSG00000279696 lnc-TAF1D-1 AJ009638 ENSG00000273885 C11orf54 CEP295
GH11J093727 Enhancer 0.4 Ensembl 0.4 +6.1 6104 0.2 POLR2A BRF2 RBM22 PAF1 ENSG00000279696 lnc-TAF1D-1 MED17 AJ009638 ENSG00000273885 C11orf54 CEP295
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AJ009638 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AJ009638 Gene

Genomic Locations for AJ009638 Gene
chr11:93,721,797-93,721,865
(GRCh38/hg38)
Size:
69 bases
Orientation:
Plus strand

Genomic View for AJ009638 Gene

Genes around AJ009638 on UCSC Golden Path with GeneCards custom track
AJ009638 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

AJ009638 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AJ009638 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for AJ009638 Gene

Proteins for AJ009638 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for AJ009638 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AJ009638 Gene

Domains & Families for AJ009638 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AJ009638 Gene

Function for AJ009638 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AJ009638 Gene

Localization for AJ009638 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AJ009638 Gene

Pathways & Interactions for AJ009638 Gene

PathCards logo

SuperPathways for AJ009638 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AJ009638 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AJ009638 Gene

Drugs & Compounds for AJ009638 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for AJ009638 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AJ009638 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000026377E_9606 snRNA 69 1

ENA: AJ009638.1:1..69:ncRNA,

AJ009638 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for AJ009638 Gene

No ASD Table

Relevant External Links for AJ009638 Gene

GeneLoc Exon Structure for
AJ009638

No data available for mRNA/cDNA for AJ009638 Gene

Expression for AJ009638 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AJ009638 Gene

Orthologs for AJ009638 Gene

No data available for Orthologs and Evolution for AJ009638 Gene

Paralogs for AJ009638 Gene

No data available for Paralogs for AJ009638 Gene

Variants for AJ009638 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for AJ009638 Gene

Disorders for AJ009638 Gene

No disorders were found for AJ009638 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AJ009638 Gene

Publications for AJ009638 Gene

No publications were found for AJ009638 Gene.

No data available for Mastermind for AJ009638 Gene

Products for AJ009638 Gene

Sources for AJ009638 Gene