Aliases for AHCTF1P1 Gene

Aliases for AHCTF1P1 Gene

  • AT-Hook Containing Transcription Factor 1 Pseudogene 1 2 3 5
  • AT Hook Containing Transcription Factor 1 Pseudogene 2 3
  • ELYS-Like 2 3
  • ELYS Transcription Factor-Like Protein TMBS62 Pseudogene 3
  • AT Hook Containing Transcription Factor 1 Pseudogene 1 2
  • AHCTF1P1 5
  • AHCTF1P 3

External Ids for AHCTF1P1 Gene

Previous HGNC Symbols for AHCTF1P1 Gene

  • AHCTF1P

Previous GeneCards Identifiers for AHCTF1P1 Gene

  • GC02M162356

Summaries for AHCTF1P1 Gene

GeneCards Summary for AHCTF1P1 Gene

AHCTF1P1 (AT-Hook Containing Transcription Factor 1 Pseudogene 1) is a Pseudogene.

Additional gene information for AHCTF1P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AHCTF1P1 Gene

Genomics for AHCTF1P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AHCTF1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J161507 Promoter 0.3 Ensembl 600.7 +0.1 101 0.4 AHCTF1P1 lnc-DPP4-8 LINC01806 SLC4A10 DPP4
GH02J161158 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.9 +344.2 344193 9.6 CEBPG SP1 HNRNPL GATAD2A ATF7 PRDM10 REST TFE3 SOX13 IKZF1 TANK LINC01806 AHCTF1P1 ENSG00000235724 ENSG00000224467 HSALNG0019989 TANK-AS1 piR-31199-182 PSMD14
GH02J162316 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.8 -810.2 -810218 5.4 SP1 GATAD2A CTCF PRDM10 REST TFE3 POLR2A BACH1 LARP7 PRDM1 GCA IFIH1 NONHSAG029692.2 AHCTF1P1 FAP lnc-FAP-3
GH02J161238 Promoter/Enhancer 2.1 VISTA UCNEbase FANTOM5 ENCODE CraniofacialAtlas 9.9 +269.3 269333 2.2 TEAD4 PRDM10 POLR2A BACH1 LARP7 ZIC2 SMAD5 ZNF600 YY1 ZNF341 lnc-RBMS1-10 lnc-RBMS1-9 TBR1 LINC01806 AHCTF1P1 SLC4A10 LOC101929512 PSMD14 ENSG00000235724 TANK
GH02J161546 Enhancer 0.4 FANTOM5 0.3 -38.9 -38938 0.2 CEBPG CEBPB ENSG00000238570 AHCTF1P1 SLC4A10 DPP4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AHCTF1P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AHCTF1P1 Gene

Genomic Locations for AHCTF1P1 Gene
chr2:161,499,067-161,507,902
(GRCh38/hg38)
Size:
8,836 bases
Orientation:
Minus strand
chr2:162,355,678-162,364,313
(GRCh37/hg19)
Size:
8,636 bases
Orientation:
Minus strand

Genomic View for AHCTF1P1 Gene

Genes around AHCTF1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AHCTF1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AHCTF1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AHCTF1P1 Gene

Proteins for AHCTF1P1 Gene

Post-translational modifications for AHCTF1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AHCTF1P1 Gene

Domains & Families for AHCTF1P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AHCTF1P1 Gene

Function for AHCTF1P1 Gene

Phenotypes From GWAS Catalog for AHCTF1P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AHCTF1P1 Gene

Localization for AHCTF1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AHCTF1P1 Gene

Pathways & Interactions for AHCTF1P1 Gene

PathCards logo

SuperPathways for AHCTF1P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AHCTF1P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AHCTF1P1 Gene

Drugs & Compounds for AHCTF1P1 Gene

No Compound Related Data Available

Transcripts for AHCTF1P1 Gene

mRNA/cDNA for AHCTF1P1 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for AHCTF1P1 Gene

No ASD Table

Relevant External Links for AHCTF1P1 Gene

GeneLoc Exon Structure for
AHCTF1P1

Expression for AHCTF1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AHCTF1P1 Gene

SOURCE GeneReport for Unigene cluster for AHCTF1P1 Gene:

Hs.470435
genes like me logo Genes that share expression patterns with AHCTF1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AHCTF1P1 Gene

Orthologs for AHCTF1P1 Gene

Evolution for AHCTF1P1 Gene

ENSEMBL:
Gene Tree for AHCTF1P1 (if available)
TreeFam:
Gene Tree for AHCTF1P1 (if available)

No data available for Orthologs for AHCTF1P1 Gene

Paralogs for AHCTF1P1 Gene

No data available for Paralogs for AHCTF1P1 Gene

Variants for AHCTF1P1 Gene

Structural Variations from Database of Genomic Variants (DGV) for AHCTF1P1 Gene

Variant ID Type Subtype PubMed ID
nsv979141 CNV duplication 23825009

Additional Variant Information for AHCTF1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AHCTF1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for AHCTF1P1 Gene

Disorders for AHCTF1P1 Gene

Additional Disease Information for AHCTF1P1

No disorders were found for AHCTF1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AHCTF1P1 Gene

Publications for AHCTF1P1 Gene

  1. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for AHCTF1P1 Gene

Sources for AHCTF1P1 Gene