Aliases for AGPAT4-IT1 Gene

Subcategory (RNA class) for AGPAT4-IT1 Gene


Number of RNA Genes sources:

2 / 17

Aliases for AGPAT4-IT1 Gene

  • AGPAT4 Intronic Transcript 1 2 3 4
  • AGPAT4 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NCRNA00241 3 4
  • C6orf59 3 4
  • Putative Uncharacterized Protein Encoded By AGPAT4-IT1 4
  • Chromosome 6 Open Reading Frame 59 2
  • Non-Protein Coding RNA 241 2
  • NONHSAG045337.2 91
  • Lnc-PRKN-1 165
  • AGPAT4-IT1 2
  • FLJ23112 2

External Ids for AGPAT4-IT1 Gene

Previous HGNC Symbols for AGPAT4-IT1 Gene

  • C6orf59
  • NCRNA00241

Previous GeneCards Identifiers for AGPAT4-IT1 Gene

  • GC06M161583

Summaries for AGPAT4-IT1 Gene

GeneCards Summary for AGPAT4-IT1 Gene

AGPAT4-IT1 (AGPAT4 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AGPAT4-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AGPAT4-IT1 Gene

Genomics for AGPAT4-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AGPAT4-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J161160 Enhancer 1 Ensembl ENCODE dbSUPER 600.7 +0.6 581 2.8 SP1 FOXA2 YY1 GABPA ZBTB33 JUND NR2F2 HNF4A RXRA MAX AGPAT4-IT1 AGPAT4 piR-54987-116 MAP3K4
GH06J161163 Enhancer 0.5 ENCODE dbSUPER 600.7 -1.7 -1722 0.2 MNT POU5F1 AGPAT4-IT1 piR-55623 AGPAT4 MAP3K4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AGPAT4-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AGPAT4-IT1 Gene

Genomic Locations for AGPAT4-IT1 Gene
1,869 bases
Minus strand
1,869 bases
Minus strand

Genomic View for AGPAT4-IT1 Gene

Genes around AGPAT4-IT1 on UCSC Golden Path with GeneCards custom track
AGPAT4-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
AGPAT4-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGPAT4-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGPAT4-IT1 Gene

Proteins for AGPAT4-IT1 Gene

  • Protein details for AGPAT4-IT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein encoded by AGPAT4-IT1
    Protein Accession:
    Secondary Accessions:
    • A7E1X1
    • Q2M1M7
    • Q5TEF2
    • Q9H5S5

    Protein attributes for AGPAT4-IT1 Gene

    198 amino acids
    Molecular mass:
    20949 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAB15545.1; Type=Frameshift; Evidence={ECO:0000305};

neXtProt entry for AGPAT4-IT1 Gene

Post-translational modifications for AGPAT4-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGPAT4-IT1 Gene

Domains & Families for AGPAT4-IT1 Gene

Gene Families for AGPAT4-IT1 Gene

Protein Domains for AGPAT4-IT1 Gene

genes like me logo Genes that share domains with AGPAT4-IT1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AGPAT4-IT1 Gene

Function for AGPAT4-IT1 Gene

genes like me logo Genes that share phenotypes with AGPAT4-IT1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGPAT4-IT1 Gene

Localization for AGPAT4-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AGPAT4-IT1 Gene

Pathways & Interactions for AGPAT4-IT1 Gene

PathCards logo

SuperPathways for AGPAT4-IT1 Gene

No Data Available

Interacting Proteins for AGPAT4-IT1 Gene

Selected Interacting proteins: Q9H0P7-AGIT1_HUMAN for AGPAT4-IT1 Gene via IID

Symbol External ID(s) Details

Gene Ontology (GO) - Biological Process for AGPAT4-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for AGPAT4-IT1 Gene

Drugs & Compounds for AGPAT4-IT1 Gene

No Compound Related Data Available

Transcripts for AGPAT4-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AGPAT4-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D301_9606 lncRNA 1869 3

HGNC: 20988,

RefSeq: NR_024277,

LNCipedia: lnc-PRKN-1:2,

URS00008B2008_9606 lncRNA 1851 2

LNCipedia: lnc-PRKN-1:3,


AGPAT4-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for AGPAT4-IT1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for AGPAT4-IT1 Gene

No ASD Table

Relevant External Links for AGPAT4-IT1 Gene

GeneLoc Exon Structure for

Expression for AGPAT4-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AGPAT4-IT1 Gene

mRNA expression in normal human tissues for AGPAT4-IT1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for AGPAT4-IT1

SOURCE GeneReport for Unigene cluster for AGPAT4-IT1 Gene:

genes like me logo Genes that share expression patterns with AGPAT4-IT1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGPAT4-IT1 Gene

Orthologs for AGPAT4-IT1 Gene

No data available for Orthologs and Evolution for AGPAT4-IT1 Gene

Paralogs for AGPAT4-IT1 Gene

No data available for Paralogs for AGPAT4-IT1 Gene

Variants for AGPAT4-IT1 Gene

Additional dbSNP identifiers (rs#s) for AGPAT4-IT1 Gene

Structural Variations from Database of Genomic Variants (DGV) for AGPAT4-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv1026543 CNV gain 25217958
nsv1030852 CNV gain 25217958
nsv528938 CNV loss 19592680

Additional Variant Information for AGPAT4-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for AGPAT4-IT1 Gene

Disorders for AGPAT4-IT1 Gene

Additional Disease Information for AGPAT4-IT1

No disorders were found for AGPAT4-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGPAT4-IT1 Gene

Publications for AGPAT4-IT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 3 4
  3. Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S … Poustka A (Genome research 2001) 3 4
  4. Mig-6 controls EGFR trafficking and suppresses gliomagenesis. (PMID: 20351267) Ying H … DePinho RA (Proceedings of the National Academy of Sciences of the United States of America 2010) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3

Products for AGPAT4-IT1 Gene

Sources for AGPAT4-IT1 Gene