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Aliases for AGBL5-IT1 Gene

Subcategory (RNA class) for AGBL5-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for AGBL5-IT1 Gene

  • AGBL5 Intronic Transcript 1 2 3 5
  • AGBL5 Intronic Transcript 1 (Non-Protein Coding) 2 3

External Ids for AGBL5-IT1 Gene

Previous GeneCards Identifiers for AGBL5-IT1 Gene

  • GC00U933879
  • GC02P027288

Summaries for AGBL5-IT1 Gene

GeneCards Summary for AGBL5-IT1 Gene

AGBL5-IT1 (AGBL5 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for AGBL5-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGBL5-IT1 Gene

Genomics for AGBL5-IT1 Gene

GeneHancer (GH) Regulatory Elements for AGBL5-IT1 Gene

Promoters and enhancers for AGBL5-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J027059 Enhancer 0.4 ENCODE 650.7 -1.4 -1390 0.2 NFIA NR2F2 AGBL5-IT1 KHK ATRAID SLC5A6 ENSG00000205500 MAPRE3 ENSG00000230286 ENSG00000272056 AGBL5
GH02J027662 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 20.7 +602.6 602608 2.4 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 SUPT7L SLC4A1AP GTF3C2 CAD GPN1 IFT172 ZNF512 SNX17 NRBP1 LOC105374363
GH02J026342 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.4 -715.3 -715268 6.3 ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC ADGRF3 SELENOI CAD ASXL2 TMEM214 GTF3C2-AS1 ENSG00000272148 AGBL5 KIF3C GAREM2
GH02J027049 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.8 -10.0 -9969 3.2 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 AGBL5-AS1 GC02P027055 PIR54422 PIR59385 TRY-GTA2-1 AGBL5 CAD EIF2B4 GPN1 NRBP1
GH02J027719 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +659.7 659710 2.5 SIN3A GLI4 ZNF2 BRCA1 ZNF416 ZFP91 ATF7 FOS KLF13 SP3 SUPT7L CAD ZNF512 EIF2B4 GPN1 GTF3C2 ZNF513 AGBL5 GTF3C2-AS1 LOC105374363
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around AGBL5-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AGBL5-IT1 Gene

Genomic Locations for AGBL5-IT1 Gene
chr2:27,061,038-27,061,815
(GRCh38/hg38)
Size:
778 bases
Orientation:
Plus strand
chr2:27,283,906-27,284,683
(GRCh37/hg19)
Size:
778 bases
Orientation:
Plus strand

Genomic View for AGBL5-IT1 Gene

Genes around AGBL5-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGBL5-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGBL5-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for AGBL5-IT1 Gene

Proteins for AGBL5-IT1 Gene

Post-translational modifications for AGBL5-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGBL5-IT1 Gene

Domains & Families for AGBL5-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AGBL5-IT1 Gene

Function for AGBL5-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGBL5-IT1 Gene

Localization for AGBL5-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AGBL5-IT1 Gene

Pathways & Interactions for AGBL5-IT1 Gene

SuperPathways for AGBL5-IT1 Gene

No Data Available

Interacting Proteins for AGBL5-IT1 Gene

Gene Ontology (GO) - Biological Process for AGBL5-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AGBL5-IT1 Gene

Drugs & Compounds for AGBL5-IT1 Gene

No Compound Related Data Available

Transcripts for AGBL5-IT1 Gene

mRNA/cDNA for AGBL5-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGBL5-IT1 Gene

No ASD Table

Relevant External Links for AGBL5-IT1 Gene

GeneLoc Exon Structure for
AGBL5-IT1
ECgene alternative splicing isoforms for
AGBL5-IT1

Expression for AGBL5-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AGBL5-IT1 Gene

genes like me logo Genes that share expression patterns with AGBL5-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGBL5-IT1 Gene

Orthologs for AGBL5-IT1 Gene

Evolution for AGBL5-IT1 Gene

ENSEMBL:
Gene Tree for AGBL5-IT1 (if available)
TreeFam:
Gene Tree for AGBL5-IT1 (if available)

No data available for Orthologs for AGBL5-IT1 Gene

Paralogs for AGBL5-IT1 Gene

No data available for Paralogs for AGBL5-IT1 Gene

Variants for AGBL5-IT1 Gene

Additional Variant Information for AGBL5-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGBL5-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AGBL5-IT1 Gene

Disorders for AGBL5-IT1 Gene

No disorders were found for AGBL5-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AGBL5-IT1 Gene

Publications for AGBL5-IT1 Gene

No publications were found for AGBL5-IT1 Gene.

Products for AGBL5-IT1 Gene

Sources for AGBL5-IT1 Gene

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