Aliases for AGBL5-IT1 Gene

Subcategory (RNA class) for AGBL5-IT1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for AGBL5-IT1 Gene

  • AGBL5 Intronic Transcript 1 2 3 5
  • AGBL5 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • AGBL5-IT1 2 170
  • HSALNG0013766 169
  • NONHSAG027300 94

External Ids for AGBL5-IT1 Gene

Previous GeneCards Identifiers for AGBL5-IT1 Gene

  • GC00U933879
  • GC02P027288

Summaries for AGBL5-IT1 Gene

GeneCards Summary for AGBL5-IT1 Gene

AGBL5-IT1 (AGBL5 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AGBL5-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AGBL5-IT1 Gene

Genomics for AGBL5-IT1 Gene

GeneHancer (GH) Regulatory Elements for AGBL5-IT1 Gene

Promoters and enhancers for AGBL5-IT1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AGBL5-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AGBL5-IT1 Gene

Genomic Locations for AGBL5-IT1 Gene
chr2:27,061,038-27,061,815
(GRCh38/hg38)
Size:
778 bases
Orientation:
Plus strand
chr2:27,283,906-27,284,683
(GRCh37/hg19)
Size:
778 bases
Orientation:
Plus strand

Genomic View for AGBL5-IT1 Gene

Genes around AGBL5-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGBL5-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGBL5-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for AGBL5-IT1 Gene

Proteins for AGBL5-IT1 Gene

Post-translational modifications for AGBL5-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGBL5-IT1 Gene

Domains & Families for AGBL5-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AGBL5-IT1 Gene

Function for AGBL5-IT1 Gene

Phenotypes From GWAS Catalog for AGBL5-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGBL5-IT1 Gene

Localization for AGBL5-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AGBL5-IT1 Gene

Pathways & Interactions for AGBL5-IT1 Gene

PathCards logo

SuperPathways for AGBL5-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AGBL5-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AGBL5-IT1 Gene

Drugs & Compounds for AGBL5-IT1 Gene

No Compound Related Data Available

Transcripts for AGBL5-IT1 Gene

mRNA/cDNA for AGBL5-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) LncBook transcripts :
(1) LNCipedia transcripts :
(1) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGBL5-IT1 Gene

No ASD Table

Relevant External Links for AGBL5-IT1 Gene

GeneLoc Exon Structure for
AGBL5-IT1
ECgene alternative splicing isoforms for
AGBL5-IT1

Expression for AGBL5-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AGBL5-IT1 Gene

genes like me logo Genes that share expression patterns with AGBL5-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGBL5-IT1 Gene

Orthologs for AGBL5-IT1 Gene

Evolution for AGBL5-IT1 Gene

ENSEMBL:
Gene Tree for AGBL5-IT1 (if available)
TreeFam:
Gene Tree for AGBL5-IT1 (if available)

No data available for Orthologs for AGBL5-IT1 Gene

Paralogs for AGBL5-IT1 Gene

No data available for Paralogs for AGBL5-IT1 Gene

Variants for AGBL5-IT1 Gene

Additional Variant Information for AGBL5-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGBL5-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AGBL5-IT1 Gene

Disorders for AGBL5-IT1 Gene

No disorders were found for AGBL5-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AGBL5-IT1 Gene

Publications for AGBL5-IT1 Gene

No publications were found for AGBL5-IT1 Gene.

No data available for External Links for AGBL5-IT1 Gene

Products for AGBL5-IT1 Gene

Sources for AGBL5-IT1 Gene