Aliases for AGBL5-AS1 Gene

Subcategory (RNA class) for AGBL5-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for AGBL5-AS1 Gene

  • AGBL5 Antisense RNA 1 2 3 5
  • AGBL5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • AGBL5-AS1 2 170
  • HSALNG0013763 169
  • NONHSAG027299 94

External Ids for AGBL5-AS1 Gene

Previous GeneCards Identifiers for AGBL5-AS1 Gene

  • GC00U933882
  • GC02M027278

Summaries for AGBL5-AS1 Gene

GeneCards Summary for AGBL5-AS1 Gene

AGBL5-AS1 (AGBL5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AGBL5-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AGBL5-AS1 Gene

Genomics for AGBL5-AS1 Gene

GeneHancer (GH) Regulatory Elements for AGBL5-AS1 Gene

Promoters and enhancers for AGBL5-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AGBL5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AGBL5-AS1 Gene

Genomic Locations for AGBL5-AS1 Gene
chr2:27,049,683-27,050,265
(GRCh38/hg38)
Size:
583 bases
Orientation:
Minus strand
chr2:27,272,551-27,273,132
(GRCh37/hg19)
Size:
582 bases
Orientation:
Minus strand

Genomic View for AGBL5-AS1 Gene

Genes around AGBL5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGBL5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGBL5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGBL5-AS1 Gene

Proteins for AGBL5-AS1 Gene

Post-translational modifications for AGBL5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGBL5-AS1 Gene

Domains & Families for AGBL5-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AGBL5-AS1 Gene

Function for AGBL5-AS1 Gene

Phenotypes From GWAS Catalog for AGBL5-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGBL5-AS1 Gene

Localization for AGBL5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AGBL5-AS1 Gene

Pathways & Interactions for AGBL5-AS1 Gene

PathCards logo

SuperPathways for AGBL5-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AGBL5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AGBL5-AS1 Gene

Drugs & Compounds for AGBL5-AS1 Gene

No Compound Related Data Available

Transcripts for AGBL5-AS1 Gene

mRNA/cDNA for AGBL5-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(2) LNCipedia transcripts :
(3) NONCODE transcripts :
(3) LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGBL5-AS1 Gene

No ASD Table

Relevant External Links for AGBL5-AS1 Gene

GeneLoc Exon Structure for
AGBL5-AS1
ECgene alternative splicing isoforms for
AGBL5-AS1

Expression for AGBL5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AGBL5-AS1 Gene

genes like me logo Genes that share expression patterns with AGBL5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGBL5-AS1 Gene

Orthologs for AGBL5-AS1 Gene

Evolution for AGBL5-AS1 Gene

ENSEMBL:
Gene Tree for AGBL5-AS1 (if available)
TreeFam:
Gene Tree for AGBL5-AS1 (if available)

No data available for Orthologs for AGBL5-AS1 Gene

Paralogs for AGBL5-AS1 Gene

No data available for Paralogs for AGBL5-AS1 Gene

Variants for AGBL5-AS1 Gene

Sequence variations from dbSNP and Humsavar for AGBL5-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000397623 -- 27,050,479(-) G/A upstream_transcript_variant
rs1000428857 -- 27,050,197(-) C/A non_coding_transcript_variant
rs1001930277 -- 27,050,648(-) C/G upstream_transcript_variant
rs1002288432 -- 27,051,403(-) G/C upstream_transcript_variant
rs1002658099 -- 27,050,922(-) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for AGBL5-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv6744n54 CNV loss 21841781
nsv455974 CNV loss 19166990
nsv817673 CNV gain 17921354

Additional Variant Information for AGBL5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGBL5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AGBL5-AS1 Gene

Disorders for AGBL5-AS1 Gene

Additional Disease Information for AGBL5-AS1

No disorders were found for AGBL5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGBL5-AS1 Gene

Publications for AGBL5-AS1 Gene

No publications were found for AGBL5-AS1 Gene.

Products for AGBL5-AS1 Gene

Sources for AGBL5-AS1 Gene