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Aliases for AGBL5-AS1 Gene

Subcategory (RNA class) for AGBL5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for AGBL5-AS1 Gene

  • AGBL5 Antisense RNA 1 2 3 5
  • AGBL5 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for AGBL5-AS1 Gene

Previous GeneCards Identifiers for AGBL5-AS1 Gene

  • GC00U933882
  • GC02M027278

Summaries for AGBL5-AS1 Gene

GeneCards Summary for AGBL5-AS1 Gene

AGBL5-AS1 (AGBL5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for AGBL5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGBL5-AS1 Gene

Genomics for AGBL5-AS1 Gene

GeneHancer (GH) Regulatory Elements for AGBL5-AS1 Gene

Promoters and enhancers for AGBL5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J027049 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 -0.8 -805 3.2 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 AGBL5-AS1 GC02P027055 PIR54422 PIR59385 TRY-GTA2-1 AGBL5 CAD EIF2B4 GPN1 NRBP1
GH02J026970 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 10.6 +78.6 78637 2.9 HDGF PKNOX1 CLOCK ARID4B SIN3A IRF4 ZNF48 E2F8 ZNF207 ZNF143 MAPRE3 KHK CAD GTF3C2 SNX17 GPN1 ZNF513 ATRAID LOC105374363 NRBP1
GH02J027090 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 10.4 -43.7 -43651 6.6 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ZNF143 KHK AGBL5 ABHD1 CGREF1 SLC5A6 ATRAID CAD PRR30 TCF23 PREB
GH02J026981 Enhancer 1 Ensembl ENCODE 10.6 +67.7 67748 1.2 ELF3 FOXA2 NFIB ARID4B RAD21 YY1 SLC30A9 ZNF614 EGR1 MIXL1 ENSG00000230286 ENSG00000205500 AGBL5 AGBL5-AS1 DPYSL5 MAPRE3 LOC100129724
GH02J026977 Enhancer 0.9 ENCODE 10.6 +72.1 72071 1.5 ATF1 FOXA2 PKNOX1 TCF12 GATA2 FOS SP3 RXRA TSHZ1 REST ENSG00000230286 ENSG00000205500 AGBL5 AGBL5-AS1 MAPRE3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AGBL5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AGBL5-AS1 Gene

Genomic Locations for AGBL5-AS1 Gene
chr2:27,049,683-27,050,264
(GRCh38/hg38)
Size:
582 bases
Orientation:
Minus strand
chr2:27,272,551-27,273,132
(GRCh37/hg19)
Size:
582 bases
Orientation:
Minus strand

Genomic View for AGBL5-AS1 Gene

Genes around AGBL5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGBL5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGBL5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGBL5-AS1 Gene

Proteins for AGBL5-AS1 Gene

Post-translational modifications for AGBL5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGBL5-AS1 Gene

Domains & Families for AGBL5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AGBL5-AS1 Gene

Function for AGBL5-AS1 Gene

Phenotypes From GWAS Catalog for AGBL5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGBL5-AS1 Gene

Localization for AGBL5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AGBL5-AS1 Gene

Pathways & Interactions for AGBL5-AS1 Gene

SuperPathways for AGBL5-AS1 Gene

No Data Available

Interacting Proteins for AGBL5-AS1 Gene

Gene Ontology (GO) - Biological Process for AGBL5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AGBL5-AS1 Gene

Drugs & Compounds for AGBL5-AS1 Gene

No Compound Related Data Available

Transcripts for AGBL5-AS1 Gene

mRNA/cDNA for AGBL5-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for AGBL5-AS1 Gene

No ASD Table

Relevant External Links for AGBL5-AS1 Gene

GeneLoc Exon Structure for
AGBL5-AS1
ECgene alternative splicing isoforms for
AGBL5-AS1

Expression for AGBL5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AGBL5-AS1 Gene

genes like me logo Genes that share expression patterns with AGBL5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGBL5-AS1 Gene

Orthologs for AGBL5-AS1 Gene

Evolution for AGBL5-AS1 Gene

ENSEMBL:
Gene Tree for AGBL5-AS1 (if available)
TreeFam:
Gene Tree for AGBL5-AS1 (if available)

No data available for Orthologs for AGBL5-AS1 Gene

Paralogs for AGBL5-AS1 Gene

No data available for Paralogs for AGBL5-AS1 Gene

Variants for AGBL5-AS1 Gene

Sequence variations from dbSNP and Humsavar for AGBL5-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000397623 -- 27,050,479(-) G/A upstream_transcript_variant
rs1000428857 -- 27,050,197(-) C/A non_coding_transcript_variant
rs1001930277 -- 27,050,648(-) C/G upstream_transcript_variant
rs1002288432 -- 27,051,403(-) G/C upstream_transcript_variant
rs1002658099 -- 27,050,922(-) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for AGBL5-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv6744n54 CNV loss 21841781
nsv455974 CNV loss 19166990
nsv817673 CNV gain 17921354

Additional Variant Information for AGBL5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGBL5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AGBL5-AS1 Gene

Disorders for AGBL5-AS1 Gene

Additional Disease Information for AGBL5-AS1

No disorders were found for AGBL5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGBL5-AS1 Gene

Publications for AGBL5-AS1 Gene

No publications were found for AGBL5-AS1 Gene.

Products for AGBL5-AS1 Gene

Sources for AGBL5-AS1 Gene

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