Aliases for AGBL4-IT1 Gene

Subcategory (RNA class) for AGBL4-IT1 Gene


Quality Score for this RNA gene is


Aliases for AGBL4-IT1 Gene

  • AGBL4 Intronic Transcript 1 2 3 5
  • AGBL4 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • AGBL4-IT1 2 170
  • NONHSAG001418 94
  • HSALNG0003501 169

External Ids for AGBL4-IT1 Gene

Previous GeneCards Identifiers for AGBL4-IT1 Gene

  • GC00U933373
  • GC01M049840

Summaries for AGBL4-IT1 Gene

GeneCards Summary for AGBL4-IT1 Gene

AGBL4-IT1 (AGBL4 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AGBL4-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AGBL4-IT1 Gene

Genomics for AGBL4-IT1 Gene

GeneHancer (GH) Regulatory Elements for AGBL4-IT1 Gene

Promoters and enhancers for AGBL4-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J049436 Enhancer 0.2 FANTOM5 0.3 +35.3 35251 0.2 AGBL4-IT1 L13713-005 AGBL4
GH01J049351 Enhancer 0.3 Ensembl 0.1 +120.0 119985 0.6 FOS JUND L13713-005 AGBL4-IT1 AGBL4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AGBL4-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AGBL4-IT1 Gene

Genomic Locations for AGBL4-IT1 Gene
97,886 bases
Minus strand
97,885 bases
Minus strand

Genomic View for AGBL4-IT1 Gene

Genes around AGBL4-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGBL4-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGBL4-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGBL4-IT1 Gene

Proteins for AGBL4-IT1 Gene

Post-translational modifications for AGBL4-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGBL4-IT1 Gene

Domains & Families for AGBL4-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AGBL4-IT1 Gene

Function for AGBL4-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGBL4-IT1 Gene

Localization for AGBL4-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AGBL4-IT1 Gene

Pathways & Interactions for AGBL4-IT1 Gene

PathCards logo

SuperPathways for AGBL4-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AGBL4-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for AGBL4-IT1 Gene

Drugs & Compounds for AGBL4-IT1 Gene

No Compound Related Data Available

Transcripts for AGBL4-IT1 Gene

mRNA/cDNA for AGBL4-IT1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(2) NONCODE transcripts :
(3) LncBook transcripts :
(1) LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGBL4-IT1 Gene

No ASD Table

Relevant External Links for AGBL4-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for AGBL4-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AGBL4-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for AGBL4-IT1 Gene

This gene is overexpressed in Testis (x25.2), Brain - Putamen (basal ganglia) (x8.7), Brain - Frontal Cortex (BA9) (x6.7), Brain - Cortex (x6.6), and Pituitary (x5.7).
genes like me logo Genes that share expression patterns with AGBL4-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGBL4-IT1 Gene

Orthologs for AGBL4-IT1 Gene

Evolution for AGBL4-IT1 Gene

Gene Tree for AGBL4-IT1 (if available)
Gene Tree for AGBL4-IT1 (if available)

No data available for Orthologs for AGBL4-IT1 Gene

Paralogs for AGBL4-IT1 Gene

No data available for Paralogs for AGBL4-IT1 Gene

Variants for AGBL4-IT1 Gene

Sequence variations from dbSNP and Humsavar for AGBL4-IT1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000027545 -- 49,443,974(-) A/G intron_variant
rs1000030606 -- 49,395,554(-) G/A intron_variant
rs1000094110 -- 49,453,983(-) A/C intron_variant
rs1000113066 -- 49,446,622(-) G/A intron_variant
rs1000129755 -- 49,406,925(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for AGBL4-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv162n100 CNV loss 25217958
dgv163n100 CNV loss 25217958
dgv265n54 CNV loss 21841781
dgv33e212 CNV loss 25503493
esv2662284 CNV deletion 23128226
esv2760076 CNV loss 21179565
esv2764215 CNV loss 21179565
esv3306252 CNV mobile element insertion 20981092
esv3351275 CNV insertion 20981092
esv3561793 CNV deletion 23714750
esv3577845 CNV loss 25503493
esv3585992 CNV loss 21293372
esv3585993 CNV loss 21293372
esv3585995 CNV loss 21293372
esv3585997 CNV loss 21293372
esv3585998 CNV loss 21293372
nsv1003151 CNV loss 25217958
nsv1006879 CNV loss 25217958
nsv1011949 CNV loss 25217958
nsv1014234 CNV loss 25217958
nsv516709 CNV loss 19592680
nsv518328 CNV loss 19592680
nsv546194 CNV loss 21841781
nsv546195 CNV loss 21841781
nsv546196 CNV loss 21841781

Additional Variant Information for AGBL4-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AGBL4-IT1 Gene

Disorders for AGBL4-IT1 Gene

Additional Disease Information for AGBL4-IT1

No disorders were found for AGBL4-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGBL4-IT1 Gene

Publications for AGBL4-IT1 Gene

No publications were found for AGBL4-IT1 Gene.

No data available for External Links for AGBL4-IT1 Gene

Products for AGBL4-IT1 Gene

Sources for AGBL4-IT1 Gene