Aliases for AGBL4-IT1 Gene

Subcategory (RNA class) for AGBL4-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for AGBL4-IT1 Gene

  • AGBL4 Intronic Transcript 1 2 3 5
  • AGBL4-IT1 2 5 165
  • AGBL4 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG001418.2 91
  • HSALNG0003501 164

External Ids for AGBL4-IT1 Gene

Previous GeneCards Identifiers for AGBL4-IT1 Gene

  • GC00U933373
  • GC01M049840

Summaries for AGBL4-IT1 Gene

GeneCards Summary for AGBL4-IT1 Gene

AGBL4-IT1 (AGBL4 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AGBL4-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AGBL4-IT1 Gene

Genomics for AGBL4-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AGBL4-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J049436 Enhancer 0.2 FANTOM5 0.3 +35.3 35251 0.2 AGBL4-IT1 L13713-005 AGBL4 BEND5
GH01J049351 Enhancer 0.3 Ensembl 0.1 +120.0 119985 0.6 JUND FOS L13713-005 AGBL4-IT1 BEND5 AGBL4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AGBL4-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AGBL4-IT1 Gene

Genomic Locations for AGBL4-IT1 Gene
chr1:49,374,201-49,472,086
(GRCh38/hg38)
Size:
97,886 bases
Orientation:
Minus strand
chr1:49,839,873-49,937,757
(GRCh37/hg19)
Size:
97,885 bases
Orientation:
Minus strand

Genomic View for AGBL4-IT1 Gene

Genes around AGBL4-IT1 on UCSC Golden Path with GeneCards custom track
AGBL4-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
AGBL4-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGBL4-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGBL4-IT1 Gene

Proteins for AGBL4-IT1 Gene

Post-translational modifications for AGBL4-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGBL4-IT1 Gene

Domains & Families for AGBL4-IT1 Gene

Gene Families for AGBL4-IT1 Gene

genes like me logo Genes that share domains with AGBL4-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AGBL4-IT1 Gene

Function for AGBL4-IT1 Gene

Phenotypes From GWAS Catalog for AGBL4-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGBL4-IT1 Gene

Localization for AGBL4-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AGBL4-IT1 Gene

Pathways & Interactions for AGBL4-IT1 Gene

PathCards logo

SuperPathways for AGBL4-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AGBL4-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AGBL4-IT1 Gene

Drugs & Compounds for AGBL4-IT1 Gene

No Compound Related Data Available

Transcripts for AGBL4-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AGBL4-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001BDE86_9606 lncRNA 514 6

HGNC: 41482,

RefSeq: NR_046839,

Ensembl: ENST00000457061 (view in UCSC) ,

LncBook: HSALNT0006614,

LNCipedia: AGBL4-IT1:1,

NONCODE: NONHSAT003144.2,

URS00009B94CA_9606 lncRNA 514 2

LncBook: HSALNT0006615,

NONCODE: NONHSAT151573.1,

URS0000EA1741_9606 lncRNA 1208 1

LncBook: HSALNT0006616,

AGBL4-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for AGBL4-IT1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGBL4-IT1 Gene

No ASD Table

Relevant External Links for AGBL4-IT1 Gene

GeneLoc Exon Structure for
AGBL4-IT1

Expression for AGBL4-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AGBL4-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for AGBL4-IT1 Gene

This gene is overexpressed in Testis (x25.2), Brain - Putamen (basal ganglia) (x8.7), Brain - Frontal Cortex (BA9) (x6.7), Brain - Cortex (x6.6), and Pituitary (x5.7).
genes like me logo Genes that share expression patterns with AGBL4-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGBL4-IT1 Gene

Orthologs for AGBL4-IT1 Gene

Evolution for AGBL4-IT1 Gene

ENSEMBL:
Gene Tree for AGBL4-IT1 (if available)
TreeFam:
Gene Tree for AGBL4-IT1 (if available)

No data available for Orthologs for AGBL4-IT1 Gene

Paralogs for AGBL4-IT1 Gene

No data available for Paralogs for AGBL4-IT1 Gene

Variants for AGBL4-IT1 Gene

Additional dbSNP identifiers (rs#s) for AGBL4-IT1 Gene

Structural Variations from Database of Genomic Variants (DGV) for AGBL4-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv162n100 CNV loss 25217958
dgv163n100 CNV loss 25217958
dgv265n54 CNV loss 21841781
dgv33e212 CNV loss 25503493
esv2662284 CNV deletion 23128226
esv2760076 CNV loss 21179565
esv2764215 CNV loss 21179565
esv3306252 CNV mobile element insertion 20981092
esv3351275 CNV insertion 20981092
esv3561793 CNV deletion 23714750
esv3577845 CNV loss 25503493
esv3585992 CNV loss 21293372
esv3585993 CNV loss 21293372
esv3585995 CNV loss 21293372
esv3585997 CNV loss 21293372
esv3585998 CNV loss 21293372
nsv1003151 CNV loss 25217958
nsv1006879 CNV loss 25217958
nsv1011949 CNV loss 25217958
nsv1014234 CNV loss 25217958
nsv516709 CNV loss 19592680
nsv518328 CNV loss 19592680
nsv546194 CNV loss 21841781
nsv546195 CNV loss 21841781
nsv546196 CNV loss 21841781

Additional Variant Information for AGBL4-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGBL4-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for AGBL4-IT1 Gene

Disorders for AGBL4-IT1 Gene

No disorders were found for AGBL4-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGBL4-IT1 Gene

Publications for AGBL4-IT1 Gene

No publications were found for AGBL4-IT1 Gene.

No data available for Mastermind for AGBL4-IT1 Gene

Products for AGBL4-IT1 Gene

Sources for AGBL4-IT1 Gene