Aliases for AGBL4-AS1 Gene

Subcategory (RNA class) for AGBL4-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for AGBL4-AS1 Gene

  • AGBL4 Antisense RNA 1 2 3
  • Novel Transcript 5
  • Lnc-ELAVL4-11 168
  • NONHSAG001417 92
  • AL590432.1 5
  • AGBL4-AS1 2

External Ids for AGBL4-AS1 Gene

Summaries for AGBL4-AS1 Gene

GeneCards Summary for AGBL4-AS1 Gene

AGBL4-AS1 (AGBL4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AGBL4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AGBL4-AS1 Gene

Genomics for AGBL4-AS1 Gene

GeneHancer (GH) Regulatory Elements for AGBL4-AS1 Gene

Promoters and enhancers for AGBL4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J049256 Promoter/Enhancer 0.8 Ensembl ENCODE 500.7 0.0 -10 1.6 NFRKB TAF7 POLR2A ZNF148 IKZF1 ATF1 ATF7 AGBL4-AS1 piR-33432-006 piR-46002-013 RF01210-013 AGBL4
GH01J049162 Enhancer 0.4 Ensembl ENCODE 0.2 -94.2 -94226 1.4 JUND ENSG00000229846 AGBL4 RF01210-013 AGBL4-AS1
GH01J049200 Enhancer 0.2 Ensembl 0.2 -56.6 -56610 0.4 RF01210-013 AGBL4-AS1 AGBL4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AGBL4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AGBL4-AS1 Gene

Genomic Locations for AGBL4-AS1 Gene
chr1:49,257,411-49,269,294
(GRCh38/hg38)
Size:
11,884 bases
Orientation:
Plus strand
chr1:49,723,083-49,734,957
(GRCh37/hg19)
Size:
11,875 bases
Orientation:
Plus strand

Genomic View for AGBL4-AS1 Gene

Genes around AGBL4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGBL4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGBL4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGBL4-AS1 Gene

Proteins for AGBL4-AS1 Gene

Post-translational modifications for AGBL4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGBL4-AS1 Gene

Domains & Families for AGBL4-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AGBL4-AS1 Gene

Function for AGBL4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGBL4-AS1 Gene

Localization for AGBL4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AGBL4-AS1 Gene

Pathways & Interactions for AGBL4-AS1 Gene

PathCards logo

SuperPathways for AGBL4-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for AGBL4-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AGBL4-AS1 Gene

Drugs & Compounds for AGBL4-AS1 Gene

No Compound Related Data Available

Transcripts for AGBL4-AS1 Gene

mRNA/cDNA for AGBL4-AS1 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for AGBL4-AS1 Gene

No ASD Table

Relevant External Links for AGBL4-AS1 Gene

GeneLoc Exon Structure for
AGBL4-AS1

Expression for AGBL4-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGBL4-AS1 Gene

Orthologs for AGBL4-AS1 Gene

Evolution for AGBL4-AS1 Gene

ENSEMBL:
Gene Tree for AGBL4-AS1 (if available)
TreeFam:
Gene Tree for AGBL4-AS1 (if available)

No data available for Orthologs for AGBL4-AS1 Gene

Paralogs for AGBL4-AS1 Gene

No data available for Paralogs for AGBL4-AS1 Gene

Variants for AGBL4-AS1 Gene

Additional dbSNP identifiers (rs#s) for AGBL4-AS1 Gene

Additional Variant Information for AGBL4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGBL4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AGBL4-AS1 Gene

Disorders for AGBL4-AS1 Gene

No disorders were found for AGBL4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AGBL4-AS1 Gene

Publications for AGBL4-AS1 Gene

No publications were found for AGBL4-AS1 Gene.

No data available for Mastermind for AGBL4-AS1 Gene

Products for AGBL4-AS1 Gene

Sources for AGBL4-AS1 Gene