Aliases for AGBL1-AS1 Gene

Subcategory (RNA class) for AGBL1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for AGBL1-AS1 Gene

  • AGBL1 Antisense RNA 1 2 3 5
  • AGBL1-AS1 2 5 165
  • NONHSAG017775.2 91
  • HSALNG0107904 164

External Ids for AGBL1-AS1 Gene

Previous GeneCards Identifiers for AGBL1-AS1 Gene

  • GC15M086840

Summaries for AGBL1-AS1 Gene

GeneCards Summary for AGBL1-AS1 Gene

AGBL1-AS1 (AGBL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AGBL1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AGBL1-AS1 Gene

Genomics for AGBL1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AGBL1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J086316 Promoter/Enhancer 0.8 EPDnew Ensembl ENCODE 608.2 +0.2 233 1.9 RFX1 BMI1 AGBL1-AS1 piR-38580-094 AGBL1
GH15J086300 Enhancer 0.6 Ensembl ENCODE 6.6 +16.6 16594 2.8 POLR2A RAD21 SMARCA4 BHLHE40 AGBL1-AS1 piR-38580-094 AGBL1
GH15J086334 Enhancer 0.4 Ensembl ENCODE 7.9 -18.9 -18946 2.6 ZNF146 AGBL1-AS1 piR-50437-222 AGBL1
GH15J086312 Enhancer 0.3 Ensembl 8.2 +4.5 4494 0.2 SMARCA4 AGBL1-AS1 piR-38580-094 AGBL1
GH15J086297 Enhancer 0.2 Ensembl 6.2 +19.4 19394 0.4 AGBL1-AS1 piR-38580-094 AGBL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AGBL1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AGBL1-AS1 Gene

Genomic Locations for AGBL1-AS1 Gene
chr15:86,283,829-86,317,195
(GRCh38/hg38)
Size:
33,367 bases
Orientation:
Minus strand
chr15:86,838,880-86,860,404
(GRCh37/hg19)
Size:
21,525 bases
Orientation:
Minus strand

Genomic View for AGBL1-AS1 Gene

Genes around AGBL1-AS1 on UCSC Golden Path with GeneCards custom track
AGBL1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
AGBL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGBL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGBL1-AS1 Gene

Proteins for AGBL1-AS1 Gene

Post-translational modifications for AGBL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGBL1-AS1 Gene

Domains & Families for AGBL1-AS1 Gene

Gene Families for AGBL1-AS1 Gene

genes like me logo Genes that share domains with AGBL1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AGBL1-AS1 Gene

Function for AGBL1-AS1 Gene

Phenotypes From GWAS Catalog for AGBL1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGBL1-AS1 Gene

Localization for AGBL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AGBL1-AS1 Gene

Pathways & Interactions for AGBL1-AS1 Gene

PathCards logo

SuperPathways for AGBL1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AGBL1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AGBL1-AS1 Gene

Drugs & Compounds for AGBL1-AS1 Gene

No Compound Related Data Available

Transcripts for AGBL1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AGBL1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001873F5_9606 lncRNA 1642 4

Ensembl: ENST00000564487 (view in UCSC) ,

LncBook: HSALNT0224012,

LNCipedia: AGBL1-AS1:7,

NONCODE: NONHSAT048132.2,

URS000075E9BB_9606 lncRNA 905 3

HGNC: 48617,

RefSeq: NR_046012,

LNCipedia: AGBL1-AS1:8,

URS0000145C77_9606 lncRNA 478 3

Ensembl: ENST00000563472 (view in UCSC) ,

LncBook: HSALNT0224026,

LNCipedia: AGBL1-AS1:1,

URS0000EF3108_9606 lncRNA 900 1

Ensembl: ENST00000566878 (view in UCSC) ,

URS00008BB6E7_9606 lncRNA 904 3

LncBook: HSALNT0224020,

LNCipedia: AGBL1-AS1:5,

NONCODE: NONHSAT048133.2,

AGBL1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for AGBL1-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for AGBL1-AS1 Gene

No ASD Table

Relevant External Links for AGBL1-AS1 Gene

GeneLoc Exon Structure for
AGBL1-AS1

Expression for AGBL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AGBL1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for AGBL1-AS1 Gene

This gene is overexpressed in Testis (x43.9).
genes like me logo Genes that share expression patterns with AGBL1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGBL1-AS1 Gene

Orthologs for AGBL1-AS1 Gene

Evolution for AGBL1-AS1 Gene

ENSEMBL:
Gene Tree for AGBL1-AS1 (if available)
TreeFam:
Gene Tree for AGBL1-AS1 (if available)

No data available for Orthologs for AGBL1-AS1 Gene

Paralogs for AGBL1-AS1 Gene

No data available for Paralogs for AGBL1-AS1 Gene

Variants for AGBL1-AS1 Gene

Additional dbSNP identifiers (rs#s) for AGBL1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for AGBL1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv519797 CNV gain 19592680
nsv833080 CNV gain 17160897

Additional Variant Information for AGBL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGBL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for AGBL1-AS1 Gene

Disorders for AGBL1-AS1 Gene

No disorders were found for AGBL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGBL1-AS1 Gene

Publications for AGBL1-AS1 Gene

  1. Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans. (PMID: 23400010) Del-Aguila JL … Boerwinkle E (The pharmacogenomics journal 2014) 3
  2. Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus. (PMID: 22961001) Su Z … Wellcome Trust Case Control Consortium 2 (Nature genetics 2012) 3

Products for AGBL1-AS1 Gene

Sources for AGBL1-AS1 Gene