Aliases for AGAP12P Gene

Aliases for AGAP12P Gene

  • ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 12, Pseudogene 2 3 5
  • Centaurin, Gamma-Like Family, Member 12 Pseudogene 2 3
  • PTPN20CP 3
  • CTGLF12P 3

External Ids for AGAP12P Gene

Previous HGNC Symbols for AGAP12P Gene

  • CTGLF12P

Summaries for AGAP12P Gene

GeneCards Summary for AGAP12P Gene

AGAP12P (ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 12, Pseudogene) is a Pseudogene.

Additional gene information for AGAP12P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AGAP12P Gene

Genomics for AGAP12P Gene

GeneHancer (GH) Regulatory Elements for AGAP12P Gene

Promoters and enhancers for AGAP12P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J048465 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.5 -437.4 -437437 5.8 ZBTB40 SMARCE1 RUNX1 MYC CC2D1A ELF1 L3MBTL2 DACH1 TEAD4 ZKSCAN8 AGAP9 BMS1P2 ARHGAP22 AGAP12P BMS1P7 ENSG00000279822 ARHGAP22-IT1 lnc-FRMPD2-5
GH10J047164 Enhancer 0.8 ENCODE CraniofacialAtlas 5.6 +865.4 865424 3.7 MYC HLF MAX ZKSCAN8 MAFK CEBPG CEBPA CTCF ZNF316 NFE2 GLUD1P2 AGAP12P HSALNG0077780 lnc-GDF10-3
GH10J048084 Enhancer 0.2 Ensembl 23.6 -53.0 -52961 0.4 AGAP12P piR-37541-002 lnc-NPY4R2-6 PTPN20CP
GH10J048251 Enhancer 0.8 Ensembl ENCODE 4.8 -220.2 -220161 2 SP7 ZSCAN21 PRDM1 ZIC2 ZBTB20 SCRT2 NR2F1 WT1 ZNF335 ZNF664 lnc-ARHGAP22-7 AGAP12P FRMPD2
GH10J048438 Enhancer 0.9 Ensembl ENCODE 4.1 -408.1 -408106 2 CEBPG IKZF1 POLR2A CEBPA RXRA GATAD2A RXRB SAP130 HNF4A SUPT5H MAPK8 AGAP12P lnc-MAPK8-1 piR-57965-004 ARHGAP22
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AGAP12P on UCSC Golden Path with GeneCards custom track

Genomic Locations for AGAP12P Gene

Genomic Locations for AGAP12P Gene
chr10:48,009,873-48,031,640
(GRCh38/hg38)
Size:
21,768 bases
Orientation:
Minus strand
chr10:49,217,898-49,239,743
(GRCh37/hg19)
Size:
21,846 bases
Orientation:
Minus strand

Genomic View for AGAP12P Gene

Genes around AGAP12P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGAP12P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGAP12P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGAP12P Gene

Proteins for AGAP12P Gene

Post-translational modifications for AGAP12P Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGAP12P Gene

Domains & Families for AGAP12P Gene

Gene Families for AGAP12P Gene

HGNC:
genes like me logo Genes that share domains with AGAP12P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AGAP12P Gene

Function for AGAP12P Gene

Phenotypes for AGAP12P Gene

genes like me logo Genes that share phenotypes with AGAP12P: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGAP12P Gene

Localization for AGAP12P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AGAP12P Gene

Pathways & Interactions for AGAP12P Gene

PathCards logo

SuperPathways for AGAP12P Gene

No Data Available

Gene Ontology (GO) - Biological Process for AGAP12P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AGAP12P Gene

Drugs & Compounds for AGAP12P Gene

No Compound Related Data Available

Transcripts for AGAP12P Gene

mRNA/cDNA for AGAP12P Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGAP12P Gene

No ASD Table

Relevant External Links for AGAP12P Gene

GeneLoc Exon Structure for
AGAP12P
ECgene alternative splicing isoforms for
AGAP12P

Expression for AGAP12P Gene

NURSA nuclear receptor signaling pathways regulating expression of AGAP12P Gene:

AGAP12P
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGAP12P Gene

Orthologs for AGAP12P Gene

Evolution for AGAP12P Gene

ENSEMBL:
Gene Tree for AGAP12P (if available)
TreeFam:
Gene Tree for AGAP12P (if available)

No data available for Orthologs for AGAP12P Gene

Paralogs for AGAP12P Gene

No data available for Paralogs for AGAP12P Gene

Variants for AGAP12P Gene

Sequence variations from dbSNP and Humsavar for AGAP12P Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs111242782 -- 48,022,059(-) C/T intron_variant
rs111383391 -- 48,018,931(-) A/G intron_variant
rs111580637 -- 48,023,561(-) A/G intron_variant
rs112037430 -- 48,018,877(-) A/G/T intron_variant
rs112874775 -- 48,011,665(-) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for AGAP12P Gene

Variant ID Type Subtype PubMed ID
dgv12e203 CNV loss 21179565
esv24863 CNV gain+loss 19812545
esv33214 CNV loss 17666407
nsv1042677 CNV loss 25217958
nsv437672 CNV loss 16327808
nsv469669 CNV gain+loss 16826518
nsv820931 CNV deletion 20802225
nsv831863 CNV gain 17160897
nsv947974 CNV duplication 23825009
nsv975693 CNV duplication 23825009
nsv975696 CNV duplication 23825009
nsv982763 CNV duplication 23825009

Additional Variant Information for AGAP12P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGAP12P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AGAP12P Gene

Disorders for AGAP12P Gene

Additional Disease Information for AGAP12P

No disorders were found for AGAP12P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGAP12P Gene

Publications for AGAP12P Gene

  1. Transcriptional fates of human-specific segmental duplications in brain. (PMID: 30228200) Dougherty ML … Eichler EE (Genome research 2018) 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for AGAP12P Gene

Products for AGAP12P Gene

Sources for AGAP12P Gene