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Aliases for AGAP1-IT1 Gene

Subcategory (RNA class) for AGAP1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for AGAP1-IT1 Gene

  • AGAP1 Intronic Transcript 1 2 3 5
  • AGAP1 Intronic Transcript 1 (Non-Protein Coding) 2 3

External Ids for AGAP1-IT1 Gene

Previous GeneCards Identifiers for AGAP1-IT1 Gene

  • GC02P236416

Summaries for AGAP1-IT1 Gene

GeneCards Summary for AGAP1-IT1 Gene

AGAP1-IT1 (AGAP1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for AGAP1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGAP1-IT1 Gene

Genomics for AGAP1-IT1 Gene

GeneHancer (GH) Regulatory Elements for AGAP1-IT1 Gene

Promoters and enhancers for AGAP1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J235504 Enhancer 1.3 Ensembl ENCODE dbSUPER 661.3 +0.6 573 1.4 FOXA2 MLX ARID4B ZNF48 YY1 NFKBIZ RXRA SP5 PPARG KAT8 AGAP1-IT1 AGAP1 PIR48120
GH02J235492 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.7 -10.4 -10432 4.3 ARID4B SIN3A ZNF48 ETS1 ZNF143 MXD4 ZNF592 SSRP1 SETDB1 CTCF AGAP1 AGAP1-IT1
GH02J235506 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.3 +2.6 2572 1.6 PKNOX1 ZNF146 CEBPG ZIC2 GATA3 ZNF316 NFE2 MAFK ZNF639 CEBPB AGAP1-IT1 AGAP1 PIR48120
GH02J235510 Enhancer 1.4 Ensembl ENCODE dbSUPER 8.8 +8.6 8593 5.3 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 YY1 SLC30A9 FOS RXRA AGAP1-IT1 AGAP1 PIR48120
GH02J235499 Enhancer 1.1 Ensembl ENCODE dbSUPER 8.6 -3.2 -3236 3 MEIS2 LEF1 JUN FEZF1 FOSL1 PATZ1 VEZF1 FOSL2 FOS GATAD2A AGAP1-IT1 AGAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around AGAP1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AGAP1-IT1 Gene

Genomic Locations for AGAP1-IT1 Gene
chr2:235,504,628-235,507,566
(GRCh38/hg38)
Size:
2,939 bases
Orientation:
Plus strand
chr2:236,414,395-236,416,210
(GRCh37/hg19)
Size:
1,816 bases
Orientation:
Plus strand

Genomic View for AGAP1-IT1 Gene

Genes around AGAP1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGAP1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGAP1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGAP1-IT1 Gene

Proteins for AGAP1-IT1 Gene

Post-translational modifications for AGAP1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGAP1-IT1 Gene

Domains & Families for AGAP1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AGAP1-IT1 Gene

Function for AGAP1-IT1 Gene

Phenotypes From GWAS Catalog for AGAP1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGAP1-IT1 Gene

Localization for AGAP1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AGAP1-IT1 Gene

Pathways & Interactions for AGAP1-IT1 Gene

SuperPathways for AGAP1-IT1 Gene

No Data Available

Interacting Proteins for AGAP1-IT1 Gene

Gene Ontology (GO) - Biological Process for AGAP1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AGAP1-IT1 Gene

Drugs & Compounds for AGAP1-IT1 Gene

No Compound Related Data Available

Transcripts for AGAP1-IT1 Gene

mRNA/cDNA for AGAP1-IT1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for AGAP1-IT1 Gene

AGAP1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGAP1-IT1 Gene

No ASD Table

Relevant External Links for AGAP1-IT1 Gene

GeneLoc Exon Structure for
AGAP1-IT1
ECgene alternative splicing isoforms for
AGAP1-IT1

Expression for AGAP1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AGAP1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for AGAP1-IT1 Gene

This gene is overexpressed in Liver (x7.4) and Colon - Transverse (x4.1).

SOURCE GeneReport for Unigene cluster for AGAP1-IT1 Gene:

Hs.684184
genes like me logo Genes that share expression patterns with AGAP1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGAP1-IT1 Gene

Orthologs for AGAP1-IT1 Gene

Evolution for AGAP1-IT1 Gene

ENSEMBL:
Gene Tree for AGAP1-IT1 (if available)
TreeFam:
Gene Tree for AGAP1-IT1 (if available)

No data available for Orthologs for AGAP1-IT1 Gene

Paralogs for AGAP1-IT1 Gene

No data available for Paralogs for AGAP1-IT1 Gene

Variants for AGAP1-IT1 Gene

Sequence variations from dbSNP and Humsavar for AGAP1-IT1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000066102 -- 235,504,723(+) A/C upstream_transcript_variant
rs1000768558 -- 235,505,581(+) G/A upstream_transcript_variant
rs1001094664 -- 235,505,367(+) G/A upstream_transcript_variant
rs1002432975 -- 235,504,381(+) C/T upstream_transcript_variant
rs1003192668 -- 235,506,834(+) G/A intron_variant

Additional Variant Information for AGAP1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGAP1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AGAP1-IT1 Gene

Disorders for AGAP1-IT1 Gene

Additional Disease Information for AGAP1-IT1

No disorders were found for AGAP1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGAP1-IT1 Gene

Publications for AGAP1-IT1 Gene

No publications were found for AGAP1-IT1 Gene.

Products for AGAP1-IT1 Gene

Sources for AGAP1-IT1 Gene

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