Aliases for AGAP1-IT1 Gene

Subcategory (RNA class) for AGAP1-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for AGAP1-IT1 Gene

  • AGAP1 Intronic Transcript 1 2 3 5
  • AGAP1-IT1 2 5 165
  • AGAP1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG030876.2 91
  • HSALNG0023240 164

External Ids for AGAP1-IT1 Gene

Previous GeneCards Identifiers for AGAP1-IT1 Gene

  • GC02P236416

Summaries for AGAP1-IT1 Gene

GeneCards Summary for AGAP1-IT1 Gene

AGAP1-IT1 (AGAP1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AGAP1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AGAP1-IT1 Gene

Genomics for AGAP1-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AGAP1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J235504 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 611.2 -0.6 -550 1.4 GATAD2A SOX13 NFKBIZ RCOR2 RXRB IRF2 SP1 GABPA CEBPA FOXK2 AGAP1-IT1 AGAP1 LOC105373944
GH02J235506 Enhancer 1 Ensembl ENCODE dbSUPER 611.2 +1.5 1455 1.6 FOXA1 ZIC2 CEBPB NFE2 ZNF316 OSR2 MAFF MAFK PKNOX1 MAFG AGAP1-IT1 5MWI_A-097 AGAP1 LOC105373944
GH02J235492 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.7 -11.3 -11320 4.7 HNRNPL SIX5 RBFOX2 POLR2A IRF2 CTCF GABPA ZFX CEBPA NRF1 AGAP1 AGAP1-IT1 LOC105373944
GH02J235509 Enhancer 1.3 Ensembl ENCODE dbSUPER 8.8 +7.1 7050 6.4 HNRNPL GATAD2A CTCF TFE3 RFX1 RCOR2 FOXA1 ZIC2 ZSCAN4 RXRB AGAP1-IT1 5MWI_A-097 TNRC17 AGAP1 LOC105373944
GH02J235499 Enhancer 0.9 ENCODE dbSUPER 8.5 -4.4 -4359 3 LEF1 JUND PATZ1 HMBOX1 GATAD2A OSR2 FOS FOSL1 FOSL2 BHLHE40 AGAP1-IT1 AGAP1 LOC105373944
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AGAP1-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AGAP1-IT1 Gene

Genomic Locations for AGAP1-IT1 Gene
chr2:235,505,751-235,507,567
(GRCh38/hg38)
Size:
1,817 bases
Orientation:
Plus strand
chr2:236,414,395-236,416,210
(GRCh37/hg19)
Size:
1,816 bases
Orientation:
Plus strand

Genomic View for AGAP1-IT1 Gene

Genes around AGAP1-IT1 on UCSC Golden Path with GeneCards custom track
AGAP1-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
AGAP1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGAP1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGAP1-IT1 Gene

Proteins for AGAP1-IT1 Gene

Post-translational modifications for AGAP1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGAP1-IT1 Gene

Domains & Families for AGAP1-IT1 Gene

Gene Families for AGAP1-IT1 Gene

genes like me logo Genes that share domains with AGAP1-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AGAP1-IT1 Gene

Function for AGAP1-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGAP1-IT1 Gene

Localization for AGAP1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AGAP1-IT1 Gene

Pathways & Interactions for AGAP1-IT1 Gene

PathCards logo

SuperPathways for AGAP1-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AGAP1-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AGAP1-IT1 Gene

Drugs & Compounds for AGAP1-IT1 Gene

No Compound Related Data Available

Transcripts for AGAP1-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AGAP1-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003531E3_9606 lncRNA 664 4

Ensembl: ENST00000440498 (view in UCSC) ,

LncBook: HSALNT0049111,

LNCipedia: AGAP1-IT1:1,

NONCODE: NONHSAT077565.2,

URS00008E3A47_9606 lncRNA 664 2

HGNC: 41427,

RefSeq: NR_131900,

URS00009BA4E6_9606 lncRNA 664 2

LncBook: HSALNT0049112,

NONCODE: NONHSAT183814.1,

AGAP1-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for AGAP1-IT1 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGAP1-IT1 Gene

No ASD Table

Relevant External Links for AGAP1-IT1 Gene

GeneLoc Exon Structure for
AGAP1-IT1

Expression for AGAP1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AGAP1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for AGAP1-IT1 Gene

This gene is overexpressed in Liver (x7.4) and Colon - Transverse (x4.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for AGAP1-IT1

SOURCE GeneReport for Unigene cluster for AGAP1-IT1 Gene:

Hs.684184
genes like me logo Genes that share expression patterns with AGAP1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGAP1-IT1 Gene

Orthologs for AGAP1-IT1 Gene

Evolution for AGAP1-IT1 Gene

ENSEMBL:
Gene Tree for AGAP1-IT1 (if available)
TreeFam:
Gene Tree for AGAP1-IT1 (if available)

No data available for Orthologs for AGAP1-IT1 Gene

Paralogs for AGAP1-IT1 Gene

No data available for Paralogs for AGAP1-IT1 Gene

Variants for AGAP1-IT1 Gene

Additional dbSNP identifiers (rs#s) for AGAP1-IT1 Gene

Additional Variant Information for AGAP1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGAP1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AGAP1-IT1 Gene

Disorders for AGAP1-IT1 Gene

No disorders were found for AGAP1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGAP1-IT1 Gene

Publications for AGAP1-IT1 Gene

No publications were found for AGAP1-IT1 Gene.

Products for AGAP1-IT1 Gene

Sources for AGAP1-IT1 Gene