Aliases for AGAP1-IT1 Gene

Subcategory (RNA class) for AGAP1-IT1 Gene


Quality Score for this RNA gene is


Aliases for AGAP1-IT1 Gene

  • AGAP1 Intronic Transcript 1 2 3 5
  • AGAP1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • AGAP1-IT1 2 170
  • HSALNG0023240 169
  • NONHSAG030876 94

External Ids for AGAP1-IT1 Gene

Previous GeneCards Identifiers for AGAP1-IT1 Gene

  • GC02P236416

Summaries for AGAP1-IT1 Gene

GeneCards Summary for AGAP1-IT1 Gene

AGAP1-IT1 (AGAP1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AGAP1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AGAP1-IT1 Gene

Genomics for AGAP1-IT1 Gene

GeneHancer (GH) Regulatory Elements for AGAP1-IT1 Gene

Promoters and enhancers for AGAP1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J235504 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 761.2 +0.6 573 1.4 FOXA1 MLX RBPJ NR2F6 CREB1 MIXL1 RAD21 ZNF148 RERE AHR AGAP1-IT1 5MWI_A-107 AGAP1
GH02J235492 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.7 -10.2 -10197 4.7 SIX5 RBPJ POLR2A L3MBTL2 MNT ZFX CEBPG MLLT1 CREB1 CEBPA AGAP1 AGAP1-IT1
GH02J235509 Enhancer 1.3 Ensembl ENCODE dbSUPER 8.8 +8.2 8173 6.4 LCORL FOXA1 MLX RBPJ ATF1 CREB1 MIXL1 NFYC RAD21 ZNF652 AGAP1-IT1 5MWI_A-107 TNRC17-001 AGAP1
GH02J235506 Enhancer 1 Ensembl ENCODE dbSUPER 11.2 +2.6 2578 1.6 MNT ZIC2 CEBPB ZNF316 NFE2 MAFK OSR2 PKNOX1 MAFG NFIC AGAP1-IT1 5MWI_A-107 AGAP1
GH02J235499 Enhancer 0.8 ENCODE dbSUPER 8.5 -3.2 -3236 3 ZNF148 SMARCA4 FOSL2 PATZ1 LEF1 JUND OSR2 GATAD2A FOS FOSL1 AGAP1-IT1 AGAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AGAP1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AGAP1-IT1 Gene

Genomic Locations for AGAP1-IT1 Gene
2,940 bases
Plus strand
1,816 bases
Plus strand

Genomic View for AGAP1-IT1 Gene

Genes around AGAP1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGAP1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGAP1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGAP1-IT1 Gene

Proteins for AGAP1-IT1 Gene

Post-translational modifications for AGAP1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGAP1-IT1 Gene

Domains & Families for AGAP1-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AGAP1-IT1 Gene

Function for AGAP1-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGAP1-IT1 Gene

Localization for AGAP1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AGAP1-IT1 Gene

Pathways & Interactions for AGAP1-IT1 Gene

PathCards logo

SuperPathways for AGAP1-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AGAP1-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for AGAP1-IT1 Gene

Drugs & Compounds for AGAP1-IT1 Gene

No Compound Related Data Available

Transcripts for AGAP1-IT1 Gene

mRNA/cDNA for AGAP1-IT1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(2) LncBook transcripts :
(2) NONCODE transcripts :
(1) LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGAP1-IT1 Gene

No ASD Table

Relevant External Links for AGAP1-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for AGAP1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AGAP1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for AGAP1-IT1 Gene

This gene is overexpressed in Liver (x7.4) and Colon - Transverse (x4.1).

SOURCE GeneReport for Unigene cluster for AGAP1-IT1 Gene:

genes like me logo Genes that share expression patterns with AGAP1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGAP1-IT1 Gene

Orthologs for AGAP1-IT1 Gene

Evolution for AGAP1-IT1 Gene

Gene Tree for AGAP1-IT1 (if available)
Gene Tree for AGAP1-IT1 (if available)

No data available for Orthologs for AGAP1-IT1 Gene

Paralogs for AGAP1-IT1 Gene

No data available for Paralogs for AGAP1-IT1 Gene

Variants for AGAP1-IT1 Gene

Sequence variations from dbSNP and Humsavar for AGAP1-IT1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000066102 -- 235,504,723(+) A/C upstream_transcript_variant
rs1000768558 -- 235,505,581(+) G/A upstream_transcript_variant
rs1001094664 -- 235,505,367(+) G/A upstream_transcript_variant
rs1002432975 -- 235,504,381(+) C/T upstream_transcript_variant
rs1003192668 -- 235,506,834(+) G/A intron_variant

Additional Variant Information for AGAP1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AGAP1-IT1 Gene

Disorders for AGAP1-IT1 Gene

Additional Disease Information for AGAP1-IT1

No disorders were found for AGAP1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGAP1-IT1 Gene

Publications for AGAP1-IT1 Gene

No publications were found for AGAP1-IT1 Gene.

Products for AGAP1-IT1 Gene

Sources for AGAP1-IT1 Gene