Aliases for AFTPH-DT Gene

Data sources for AFTPH-DT Gene:

Subcategory (RNA class) for AFTPH-DT Gene

lncRNA

Aliases for AFTPH-DT Gene

External Ids for AFTPH-DT Gene

Summaries for AFTPH-DT Gene

GeneCards Summary for AFTPH-DT Gene

AFTPH-DT (AFTPH Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AFTPH-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AFTPH-DT Gene

Genomics for AFTPH-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AFTPH-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J064600 Enhancer 0.7 Ensembl ENCODE 4.4 -62.2 -62209 1.5 MAFF ZNF316 MAFK SCRT1 MAFG PRDM10 ZNF121 EMSY SERTAD2 AFTPH-DT ENSG00000225889 LINC02579 HSALNG0015484 lnc-SERTAD2-6 LOC105374772 AFTPH
GH02J064522 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +13.9 13866 5.8 CHD2 TBP MXD4 SIX5 NR2C1 MNT SMAD5 ETS1 MBD2 ZNF217 AFTPH MIR4434 VPS54 SERTAD2 AFTPH-DT LOC105374773
GH02J064534 Promoter 0.8 Ensembl 0.7 +4.5 4466 0.2 IRF4 BATF ELF1 NFATC1 IKZF1 MTA3 NR2F1 ATF2 JUNB MIXL1 AFTPH-DT MIR4434 AFTPH LOC105374773 SERTAD2
GH02J064542 Enhancer 0.6 ENCODE 0.7 -3.7 -3665 0.2 FOXA2 MAFF ZSCAN9 ZNF316 MAFK FOXA1 NR2F6 SP1 HNF4A PPARG AFTPH AFTPH-DT MK280144-357 LOC105374773 SERTAD2
GH02J064516 Enhancer 1 Ensembl ENCODE 0.3 +22.3 22307 1.3 CEBPA ZNF217 KDM6A THAP11 CUX1 FOXA2 SMAD4 SAP130 NONO RXRA RN7SL211P AFTPH piR-52438-057 AFTPH-DT LGALSL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AFTPH-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AFTPH-DT Gene

Latest Assembly
chr2:64,493,644-64,539,167
(GRCh38/hg38)
Size:
45,524 bases
Orientation:
Minus strand

Previous Assembly
chr2:64,749,323-64,751,289
(GRCh37/hg19 by Entrez Gene)
Size:
1,967 bases
Orientation:
Minus strand

chr2:64,749,321-64,751,227
(GRCh37/hg19 by Ensembl)
Size:
1,907 bases
Orientation:
Minus strand

Genomic View for AFTPH-DT Gene

Genes around AFTPH-DT on UCSC Golden Path with GeneCards custom track
AFTPH-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
AFTPH-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AFTPH-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AFTPH-DT Gene

Proteins for AFTPH-DT Gene

Post-translational modifications for AFTPH-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for AFTPH-DT Gene

Domains & Families for AFTPH-DT Gene

Gene Families for AFTPH-DT Gene

genes like me logo Genes that share domains with AFTPH-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AFTPH-DT Gene

Function for AFTPH-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AFTPH-DT Gene

Localization for AFTPH-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AFTPH-DT Gene

Pathways & Interactions for AFTPH-DT Gene

PathCards logo

SuperPathways for AFTPH-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for AFTPH-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AFTPH-DT Gene

Drugs & Compounds for AFTPH-DT Gene

No Compound Related Data Available

Transcripts for AFTPH-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AFTPH-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000506108_9606 lncRNA 1907 3

Ensembl: ENST00000561559 (view in UCSC) ,

LNCipedia: lnc-SERTAD2-1:2,

NONCODE: NONHSAT071120.2,

URS0000A76F9F_9606 lncRNA 1967 1

RefSeq: NR_136167,

URS00008B23A3_9606 lncRNA 1334 3

LncBook: HSALNT0032704,

LNCipedia: lnc-SERTAD2-1:1,

NONCODE: NONHSAT071119.2,

URS00009AFEA5_9606 lncRNA 462 2

LncBook: HSALNT0032707,

NONCODE: NONHSAT184755.1,

URS0000D5E2A7_9606 lncRNA 3861 1

LNCipedia: lnc-SERTAD2-1:3,

AFTPH-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for AFTPH-DT Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for AFTPH-DT Gene

No ASD Table

Relevant External Links for AFTPH-DT Gene

GeneLoc Exon Structure for
AFTPH-DT

Expression for AFTPH-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for AFTPH-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AFTPH-DT Gene

Orthologs for AFTPH-DT Gene

Evolution for AFTPH-DT Gene

ENSEMBL:
Gene Tree for AFTPH-DT (if available)
TreeFam:
Gene Tree for AFTPH-DT (if available)

No data available for Orthologs for AFTPH-DT Gene

Paralogs for AFTPH-DT Gene

No data available for Paralogs for AFTPH-DT Gene

Variants for AFTPH-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for AFTPH-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for AFTPH-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AFTPH-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AFTPH-DT Gene

Disorders for AFTPH-DT Gene

Additional Disease Information for AFTPH-DT

Open Targets Platform
Open Targets Platform

No disorders were found for AFTPH-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AFTPH-DT Gene

Publications for AFTPH-DT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for AFTPH-DT Gene

Products for AFTPH-DT Gene

Sources for AFTPH-DT Gene