Aliases for AFF2-IT1 Gene

Subcategory (RNA class) for AFF2-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for AFF2-IT1 Gene

  • AFF2 Intronic Transcript 1 2 3 5
  • AFF2-IT1 2 5 165
  • AFF2 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG055486.2 91
  • HSALNG0140576 164

External Ids for AFF2-IT1 Gene

Previous GeneCards Identifiers for AFF2-IT1 Gene

  • GC00U933111
  • GC0XP147629

Summaries for AFF2-IT1 Gene

GeneCards Summary for AFF2-IT1 Gene

AFF2-IT1 (AFF2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AFF2-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AFF2-IT1 Gene

Genomics for AFF2-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AFF2-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ148500 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 -45.5 -45477 2.8 ZNF341 ZBTB20 ZBTB48 ZBTB26 ZBTB17 ZFHX2 ZNF335 GLIS1 ZNF398 EZH2 AFF2 ENSG00000237741 AFF2-IT1 ENSG00000287585
GH0XJ148541 Enhancer 0.3 Ensembl 0.7 -3.7 -3678 2.8 SMARCA4 CTCF AFF2-IT1 AFF2 ENSG00000287585
GH0XJ148540 Enhancer 0.4 Ensembl 0.4 -6.0 -5977 0.2 IKZF1 NFE2 ZNF316 AFF2-IT1 AFF2 ENSG00000287585
GH0XJ148566 Enhancer 0.4 Ensembl 0.4 +21.6 21623 1.4 CEBPG BCOR CEBPB ZMYM3 AFF2-IT1 AFF2 RF00017-8788 ENSG00000287585
GH0XJ148598 Enhancer 0.6 Ensembl 0.2 +52.4 52423 0.6 LEF1 DPF2 SOX6 EP300 NCOR1 TAL1 TCF12 MEIS2 MTA2 SMARCE1 AFF2-IT1 AFF2 RF00017-8788 ENSG00000287585
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AFF2-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AFF2-IT1 Gene

Genomic Locations for AFF2-IT1 Gene
chrX:148,546,878-148,547,398
(GRCh38/hg38)
Size:
521 bases
Orientation:
Plus strand
chrX:147,628,399-147,628,918
(GRCh37/hg19)
Size:
520 bases
Orientation:
Plus strand

Genomic View for AFF2-IT1 Gene

Genes around AFF2-IT1 on UCSC Golden Path with GeneCards custom track
AFF2-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
AFF2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AFF2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for AFF2-IT1 Gene

Proteins for AFF2-IT1 Gene

Post-translational modifications for AFF2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AFF2-IT1 Gene

Domains & Families for AFF2-IT1 Gene

Gene Families for AFF2-IT1 Gene

genes like me logo Genes that share domains with AFF2-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AFF2-IT1 Gene

Function for AFF2-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AFF2-IT1 Gene

Localization for AFF2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AFF2-IT1 Gene

Pathways & Interactions for AFF2-IT1 Gene

PathCards logo

SuperPathways for AFF2-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AFF2-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AFF2-IT1 Gene

Drugs & Compounds for AFF2-IT1 Gene

No Compound Related Data Available

Transcripts for AFF2-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AFF2-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001F0F1B_9606 lncRNA 443 5

HGNC: 41334,

Ensembl: ENST00000435346 (view in UCSC) ,

LncBook: HSALNT0287199,

LNCipedia: AFF2-IT1:1,

NONCODE: NONHSAT138919.2,

URS00009C1EC5_9606 lncRNA 443 2

LncBook: HSALNT0287200,

NONCODE: NONHSAT223103.1,

AFF2-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for AFF2-IT1 Gene

No ASD Table

Relevant External Links for AFF2-IT1 Gene

GeneLoc Exon Structure for
AFF2-IT1

No data available for mRNA/cDNA for AFF2-IT1 Gene

Expression for AFF2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AFF2-IT1 Gene

genes like me logo Genes that share expression patterns with AFF2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AFF2-IT1 Gene

Orthologs for AFF2-IT1 Gene

Evolution for AFF2-IT1 Gene

ENSEMBL:
Gene Tree for AFF2-IT1 (if available)
TreeFam:
Gene Tree for AFF2-IT1 (if available)

No data available for Orthologs for AFF2-IT1 Gene

Paralogs for AFF2-IT1 Gene

No data available for Paralogs for AFF2-IT1 Gene

Variants for AFF2-IT1 Gene

Additional Variant Information for AFF2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AFF2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AFF2-IT1 Gene

Disorders for AFF2-IT1 Gene

No disorders were found for AFF2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AFF2-IT1 Gene

Publications for AFF2-IT1 Gene

No publications were found for AFF2-IT1 Gene.

No data available for Mastermind for AFF2-IT1 Gene

Products for AFF2-IT1 Gene

Sources for AFF2-IT1 Gene