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Aliases for AFF2-IT1 Gene

Subcategory (RNA class) for AFF2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for AFF2-IT1 Gene

  • AFF2 Intronic Transcript 1 2 3 5
  • AFF2 Intronic Transcript 1 (Non-Protein Coding) 2 3

External Ids for AFF2-IT1 Gene

Previous GeneCards Identifiers for AFF2-IT1 Gene

  • GC00U933111
  • GC0XP147629

Summaries for AFF2-IT1 Gene

GeneCards Summary for AFF2-IT1 Gene

AFF2-IT1 (AFF2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for AFF2-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AFF2-IT1 Gene

Genomics for AFF2-IT1 Gene

GeneHancer (GH) Regulatory Elements for AFF2-IT1 Gene

Promoters and enhancers for AFF2-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ148500 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 0.2 -45.8 -45777 1.8 ZNF398 ZBTB8A ZNF335 ZFHX2 GLIS2 ZBTB48 GLIS1 ZNF341 ZBTB26 ZBTB17 AFF2 ENSG00000237741 AFF2-IT1
GH0XJ148609 Enhancer 0.8 Ensembl ENCODE 0.2 +63.3 63295 1.3 SMARCA5 ZNF140 JUNB EBF1 ELF1 DPF2 BATF ATF2 IKZF1 EED LINC00893 IDS2 FMR1-IT1 AFF2-IT1 AFF2 RN7SKP267
GH0XJ148747 Enhancer 0.6 VISTA UCNEbase 0.1 +201.2 201186 1.1 RN7SKP267 AFF2-IT1 AFF2
GH0XJ148799 Enhancer 0.4 UCNEbase 0.1 +252.8 252823 0.3 RN7SKP267 AFF2-IT1 AFF2
GH0XJ148647 Enhancer 0.3 Ensembl 0.1 +101.1 101123 0.4 POLR2A AFF2-IT1 AFF2 RN7SKP267
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AFF2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AFF2-IT1 Gene

Genomic Locations for AFF2-IT1 Gene
chrX:148,546,878-148,547,397
(GRCh38/hg38)
Size:
520 bases
Orientation:
Plus strand
chrX:147,628,399-147,628,918
(GRCh37/hg19)
Size:
520 bases
Orientation:
Plus strand

Genomic View for AFF2-IT1 Gene

Genes around AFF2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AFF2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AFF2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for AFF2-IT1 Gene

Function for AFF2-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AFF2-IT1 Gene

Localization for AFF2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AFF2-IT1 Gene

Pathways & Interactions for AFF2-IT1 Gene

SuperPathways for AFF2-IT1 Gene

No Data Available

Interacting Proteins for AFF2-IT1 Gene

Gene Ontology (GO) - Biological Process for AFF2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AFF2-IT1 Gene

Drugs & Compounds for AFF2-IT1 Gene

No Compound Related Data Available

Transcripts for AFF2-IT1 Gene

mRNA/cDNA for AFF2-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for AFF2-IT1 Gene

No ASD Table

Relevant External Links for AFF2-IT1 Gene

GeneLoc Exon Structure for
AFF2-IT1
ECgene alternative splicing isoforms for
AFF2-IT1

Expression for AFF2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AFF2-IT1 Gene

genes like me logo Genes that share expression patterns with AFF2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AFF2-IT1 Gene

Orthologs for AFF2-IT1 Gene

Evolution for AFF2-IT1 Gene

ENSEMBL:
Gene Tree for AFF2-IT1 (if available)
TreeFam:
Gene Tree for AFF2-IT1 (if available)

No data available for Orthologs for AFF2-IT1 Gene

Paralogs for AFF2-IT1 Gene

No data available for Paralogs for AFF2-IT1 Gene

Variants for AFF2-IT1 Gene

Additional Variant Information for AFF2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AFF2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AFF2-IT1 Gene

Disorders for AFF2-IT1 Gene

No disorders were found for AFF2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AFF2-IT1 Gene

Publications for AFF2-IT1 Gene

No publications were found for AFF2-IT1 Gene.

Products for AFF2-IT1 Gene

Sources for AFF2-IT1 Gene

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