Aliases for AFF2-IT1 Gene

Subcategory (RNA class) for AFF2-IT1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for AFF2-IT1 Gene

  • AFF2 Intronic Transcript 1 2 3 5
  • AFF2 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • AFF2-IT1 2 170
  • HSALNG0140576 169
  • NONHSAG055486 94

External Ids for AFF2-IT1 Gene

Previous GeneCards Identifiers for AFF2-IT1 Gene

  • GC00U933111
  • GC0XP147629

Summaries for AFF2-IT1 Gene

GeneCards Summary for AFF2-IT1 Gene

AFF2-IT1 (AFF2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AFF2-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AFF2-IT1 Gene

Genomics for AFF2-IT1 Gene

GeneHancer (GH) Regulatory Elements for AFF2-IT1 Gene

Promoters and enhancers for AFF2-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ148500 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE CraniofacialAtlas 0.2 -45.5 -45477 2.8 GLIS2 ZBTB8A ZBTB20 ZBTB48 ZBTB17 ZFHX2 ZNF335 GLIS1 ZNF398 AFF2 ENSG00000237741 AFF2-IT1
GH0XJ148540 Enhancer 0.4 Ensembl 0.4 -6.0 -5977 0.2 IKZF1 ZNF316 NFE2 AFF2-IT1 AFF2
GH0XJ148598 Enhancer 0.6 Ensembl 0.2 +52.4 52423 0.6 SMARCE1 DACH1 TEAD4 CBFA2T2 SMARCA4 DPF2 LEF1 EP300 SOX6 NCOR1 AFF2-IT1 AFF2 RF00017-8786
GH0XJ148566 Enhancer 0.4 Ensembl 0.3 +21.6 21623 1.4 CEBPG BCOR CEBPB ZMYM3 AFF2-IT1 AFF2 RF00017-8786
GH0XJ148609 Enhancer 0.6 ENCODE 0.2 +63.3 63275 1.2 IKZF1 IKZF2 ZNF140 DPF2 EED ELF1 RUNX3 JUNB NBN SMARCA5 LINC00893 ENSG00000238039 FMR1-IT1 AFF2-IT1 RF00017-8786 AFF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AFF2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AFF2-IT1 Gene

Genomic Locations for AFF2-IT1 Gene
chrX:148,546,878-148,547,398
(GRCh38/hg38)
Size:
521 bases
Orientation:
Plus strand
chrX:147,628,399-147,628,918
(GRCh37/hg19)
Size:
520 bases
Orientation:
Plus strand

Genomic View for AFF2-IT1 Gene

Genes around AFF2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AFF2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AFF2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for AFF2-IT1 Gene

Proteins for AFF2-IT1 Gene

Post-translational modifications for AFF2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AFF2-IT1 Gene

Domains & Families for AFF2-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AFF2-IT1 Gene

Function for AFF2-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AFF2-IT1 Gene

Localization for AFF2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AFF2-IT1 Gene

Pathways & Interactions for AFF2-IT1 Gene

PathCards logo

SuperPathways for AFF2-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AFF2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AFF2-IT1 Gene

Drugs & Compounds for AFF2-IT1 Gene

No Compound Related Data Available

Transcripts for AFF2-IT1 Gene

mRNA/cDNA for AFF2-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(2) NONCODE transcripts :
(1) LNCipedia transcripts :
(2) LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for AFF2-IT1 Gene

No ASD Table

Relevant External Links for AFF2-IT1 Gene

GeneLoc Exon Structure for
AFF2-IT1
ECgene alternative splicing isoforms for
AFF2-IT1

Expression for AFF2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AFF2-IT1 Gene

genes like me logo Genes that share expression patterns with AFF2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AFF2-IT1 Gene

Orthologs for AFF2-IT1 Gene

Evolution for AFF2-IT1 Gene

ENSEMBL:
Gene Tree for AFF2-IT1 (if available)
TreeFam:
Gene Tree for AFF2-IT1 (if available)

No data available for Orthologs for AFF2-IT1 Gene

Paralogs for AFF2-IT1 Gene

No data available for Paralogs for AFF2-IT1 Gene

Variants for AFF2-IT1 Gene

Additional Variant Information for AFF2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AFF2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AFF2-IT1 Gene

Disorders for AFF2-IT1 Gene

No disorders were found for AFF2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AFF2-IT1 Gene

Publications for AFF2-IT1 Gene

No publications were found for AFF2-IT1 Gene.

No data available for External Links for AFF2-IT1 Gene

Products for AFF2-IT1 Gene

Sources for AFF2-IT1 Gene