Free for academic non-profit institutions. Other users need a Commercial license

AFF1-AS1 Gene(RNA Gene)

AFF1 Antisense RNA 1

GCID:
GC04M086877
GIFtS:
13
Genes Participants
UDN Logo

Aliases for AFF1-AS1 Gene

Subcategory (RNA class) for AFF1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AFF1-AS1 Gene

  • AFF1 Antisense RNA 1 2 3
  • C4orf36 4 5
  • Chromosome 4 Open Reading Frame 36 5

External Ids for AFF1-AS1 Gene

Summaries for AFF1-AS1 Gene

GeneCards Summary for AFF1-AS1 Gene

AFF1-AS1 (AFF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for AFF1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AFF1-AS1 Gene

Genomics for AFF1-AS1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for AFF1-AS1 Gene

Promoters and enhancers for AFF1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04I086933 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.3 -1305 7.8 HDGF PKNOX1 SMAD1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 C4orf36 AFF1 AFF1-AS1 RPL6P13 LOC100419572 LOC260422 MAPK10 SLC10A6 TECRP1
GH04I087004 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.8 -74.3 -74251 11.9 CLOCK MLX ZFP64 IRF4 YY1 ZNF213 E2F8 ZNF143 NFYC ZNF610 AFF1 RPL6P13 AFF1-AS1 C4orf36 LOC100419572 LOC260422 MAPK10 HSD17B13 SLC10A6 GC04P087042
GH04I086957 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 13.3 -24.2 -24154 6.3 PKNOX1 FOXA2 ARNT SIN3A FEZF1 IRF4 YY1 ZNF766 ZNF213 JUNB AFF1 AFF1-AS1 C4orf36 LOC260422 MAPK10 NUDT9 KLHL8 GC04P086967 PIR55151 TECRP1
GH04I087101 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -169.4 -169431 7.7 PKNOX1 CLOCK FOXA2 SCRT2 FOS CREM MIXL1 PPARG KAT8 ZNF217 AFF1 AFF1-AS1 C4orf36 MAPK10 ENSG00000250572 HSD17B13 GC04P087116 LOC105377320
GH04I087028 Enhancer 1.3 Ensembl ENCODE dbSUPER 12 -99.1 -99141 13.1 HDGF PKNOX1 FOXA2 SIN3A FEZF1 TCF12 ZNF143 ATF7 RXRA NCOA1 AFF1 AFF1-AS1 C4orf36 LOC260422 MAPK10 SLC10A6 NUDT9 GC04P087042 PIR55151 GC04P086967
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around AFF1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AFF1-AS1 Gene

Genomic Locations for AFF1-AS1 Gene
chr4:86,876,205-86,936,202
(GRCh38/hg38)
Size:
59,998 bases
Orientation:
Minus strand
chr4:87,846,046-87,856,002
(GRCh37/hg19)

Genomic View for AFF1-AS1 Gene

Genes around AFF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AFF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AFF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for AFF1-AS1 Gene

Proteins for AFF1-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for AFF1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96KX1-CD036_HUMAN
    Recommended name:
    Uncharacterized protein C4orf36
    Protein Accession:
    Q96KX1

    Protein attributes for AFF1-AS1 Gene

    Size:
    117 amino acids
    Molecular mass:
    13276 Da
    Quaternary structure:
    No Data Available

neXtProt entry for AFF1-AS1 Gene

Post-translational modifications for AFF1-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for AFF1-AS1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for AFF1-AS1 Gene

Domains & Families for AFF1-AS1 Gene

Protein Domains for AFF1-AS1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AFF1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AFF1-AS1 Gene

Function for AFF1-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for AFF1-AS1 Gene

Phenotypes for AFF1-AS1 Gene

GenomeRNAi human phenotypes for AFF1-AS1:
genes like me logo Genes that share phenotypes with AFF1-AS1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AFF1-AS1 Gene

Localization for AFF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AFF1-AS1 Gene

Pathways & Interactions for AFF1-AS1 Gene

SuperPathways for AFF1-AS1 Gene

PathCards logo More details on SuperPathways for AFF1-AS1
No Data Available

Interacting Proteins for AFF1-AS1 Gene

Gene Ontology (GO) - Biological Process for AFF1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AFF1-AS1 Gene

Drugs & Compounds for AFF1-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for AFF1-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for AFF1-AS1 Gene

(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for AFF1-AS1 Gene

No ASD Table

Relevant External Links for AFF1-AS1 Gene

GeneLoc Exon Structure for
AFF1-AS1
ECgene alternative splicing isoforms for
AFF1-AS1

Expression for AFF1-AS1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AFF1-AS1 Gene

Orthologs for AFF1-AS1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for AFF1-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia C4orf36 34
  • 99 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia C4orf36 34
  • 74 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia 1700016H13Rik 34
  • 63 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia C4orf36 34
  • 52 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia C4orf36 34
  • 34 (a)
 OneToOne
Species where no ortholog for AFF1-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for AFF1-AS1 Gene

ENSEMBL:
Gene Tree for AFF1-AS1 (if available)
TreeFam:
Gene Tree for AFF1-AS1 (if available)

Paralogs for AFF1-AS1 Gene

No data available for Paralogs for AFF1-AS1 Gene

Variants for AFF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for AFF1-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000000112 -- 86,931,361(-) C/T intron_variant
rs1000082113 -- 86,936,184(-) G/A upstream_transcript_variant
rs1000482326 -- 86,926,805(-) G/A intron_variant
rs1001013817 -- 86,931,409(-) T/C intron_variant
rs1001157783 -- 86,932,299(-) A/G intron_variant

Additional Variant Information for AFF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AFF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AFF1-AS1 Gene

Disorders for AFF1-AS1 Gene

Additional Disease Information for AFF1-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for AFF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AFF1-AS1 Gene

Publications for AFF1-AS1 Gene

  1. A high-density genome-wide association screen of sporadic ALS in US veterans. (PMID: 22470424) Kwee LC … Hauser MA (PloS one 2012) 3 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58

Products for AFF1-AS1 Gene

Sources for AFF1-AS1 Gene

Content
Loading form....