Aliases for AFF1-AS1 Gene

Subcategory (RNA class) for AFF1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for AFF1-AS1 Gene

  • AFF1 Antisense RNA 1 2 3
  • AFF1-AS1 2 170
  • HSALNG0035669 169

External Ids for AFF1-AS1 Gene

Previous GeneCards Identifiers for AFF1-AS1 Gene

  • GC04M086925
  • GC04M086927
  • GC04M086877

Summaries for AFF1-AS1 Gene

GeneCards Summary for AFF1-AS1 Gene

AFF1-AS1 (AFF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AFF1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AFF1-AS1 Gene

Genomics for AFF1-AS1 Gene

GeneHancer (GH) Regulatory Elements for AFF1-AS1 Gene

Promoters and enhancers for AFF1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J086933 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.6 -2.6 -2564 8 ZNF24 ZBTB40 CTCF RBPJ SMARCE1 POLR2A NR2F1 CREB1 MIXL1 ZNF362 AFF1 C4orf36 ENSG00000284968 ENSG00000285458 ENSG00000243312 ENSG00000248196 ENSG00000251411 MAPK10 SLC10A6 AFF1-AS1
GH04J086917 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.3 12349 14.2 ZBTB40 CTCF SMARCE1 POLR2A CREB1 MIXL1 CC2D1A NFYC HLF DACH1 C4orf36 ENSG00000251411 AFF1 HSD17B13 PTPN13 HSD17B11 LOC260422 AFF1-AS1 ENSG00000284968 ENSG00000285458
GH04J086931 Enhancer 0.2 Ensembl 0.6 +3.4 3449 0.4 ENSG00000251411 AFF1 AFF1-AS1 ENSG00000284968 ENSG00000285458 LOC260422
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AFF1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AFF1-AS1 Gene

Genomic Locations for AFF1-AS1 Gene
chr4:86,924,894-86,934,850
(GRCh38/hg38)
Size:
9,957 bases
Orientation:
Minus strand
chr4:87,846,046-87,856,002
(GRCh37/hg19)
Size:
9,957 bases
Orientation:
Minus strand

Genomic View for AFF1-AS1 Gene

Genes around AFF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AFF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AFF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AFF1-AS1 Gene

Proteins for AFF1-AS1 Gene

Post-translational modifications for AFF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AFF1-AS1 Gene

Domains & Families for AFF1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AFF1-AS1 Gene

Function for AFF1-AS1 Gene

Phenotypes From GWAS Catalog for AFF1-AS1 Gene

Phenotypes for AFF1-AS1 Gene

genes like me logo Genes that share phenotypes with AFF1-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AFF1-AS1 Gene

Localization for AFF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AFF1-AS1 Gene

Pathways & Interactions for AFF1-AS1 Gene

PathCards logo

SuperPathways for AFF1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AFF1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AFF1-AS1 Gene

Drugs & Compounds for AFF1-AS1 Gene

No Compound Related Data Available

Transcripts for AFF1-AS1 Gene

mRNA/cDNA for AFF1-AS1 Gene

(1) REFSEQ mRNAs :
(5) RNACentral transcripts :
(5) LNCipedia transcripts :
(1) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for AFF1-AS1 Gene

No ASD Table

Relevant External Links for AFF1-AS1 Gene

GeneLoc Exon Structure for
AFF1-AS1
ECgene alternative splicing isoforms for
AFF1-AS1

Expression for AFF1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AFF1-AS1 Gene

Orthologs for AFF1-AS1 Gene

No data available for Orthologs and Evolution for AFF1-AS1 Gene

Paralogs for AFF1-AS1 Gene

No data available for Paralogs for AFF1-AS1 Gene

Variants for AFF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for AFF1-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000000112 -- 86,931,361(-) C/T intron_variant
rs1000082113 -- 86,936,184(-) G/A/T upstream_transcript_variant
rs1000482326 -- 86,926,805(-) G/A intron_variant
rs1001013817 -- 86,931,409(-) T/C intron_variant
rs1001157783 -- 86,932,299(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for AFF1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1013308 CNV gain 25217958
nsv508297 CNV deletion 20534489
nsv594787 CNV gain 21841781

Additional Variant Information for AFF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AFF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AFF1-AS1 Gene

Disorders for AFF1-AS1 Gene

Additional Disease Information for AFF1-AS1

No disorders were found for AFF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AFF1-AS1 Gene

Publications for AFF1-AS1 Gene

  1. A high-density genome-wide association screen of sporadic ALS in US veterans. (PMID: 22470424) Kwee LC … Hauser MA (PloS one 2012) 3 56

No data available for External Links for AFF1-AS1 Gene

Products for AFF1-AS1 Gene

Sources for AFF1-AS1 Gene