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Aliases for AFF1-AS1 Gene

Subcategory (RNA class) for AFF1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for AFF1-AS1 Gene

  • AFF1 Antisense RNA 1 2 3

External Ids for AFF1-AS1 Gene

Previous GeneCards Identifiers for AFF1-AS1 Gene

  • GC04M086877

Summaries for AFF1-AS1 Gene

GeneCards Summary for AFF1-AS1 Gene

AFF1-AS1 (AFF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for AFF1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AFF1-AS1 Gene

Genomics for AFF1-AS1 Gene

GeneHancer (GH) Regulatory Elements for AFF1-AS1 Gene

Promoters and enhancers for AFF1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J086933 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.7 -2.7 -2657 7.8 HDGF PKNOX1 SMAD1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 AFF1 C4orf36 ENSG00000284968 ENSG00000285458 RPL6P13 LOC100419572 LOC260422 MAPK10 SLC10A6 AFF1-AS1
GH04J086924 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.3 8271 5.1 FOXA2 BRCA1 YY1 FOS DEK SP3 MAFF SMARCA4 NBN STAT3 C4orf36 AFF1 HSD17B11 AFF1-AS1 ENSG00000284968 ENSG00000285458 LOC260422
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around AFF1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AFF1-AS1 Gene

Genomic Locations for AFF1-AS1 Gene
chr4:86,924,894-86,934,850
(GRCh38/hg38)
Size:
9,957 bases
Orientation:
Minus strand
chr4:87,846,046-87,856,002
(GRCh37/hg19)
Size:
9,957 bases
Orientation:
Minus strand

Genomic View for AFF1-AS1 Gene

Genes around AFF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AFF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AFF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AFF1-AS1 Gene

Function for AFF1-AS1 Gene

Phenotypes From GWAS Catalog for AFF1-AS1 Gene

Phenotypes for AFF1-AS1 Gene

genes like me logo Genes that share phenotypes with AFF1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AFF1-AS1 Gene

Localization for AFF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AFF1-AS1 Gene

Pathways & Interactions for AFF1-AS1 Gene

SuperPathways for AFF1-AS1 Gene

No Data Available

Interacting Proteins for AFF1-AS1 Gene

Gene Ontology (GO) - Biological Process for AFF1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AFF1-AS1 Gene

Drugs & Compounds for AFF1-AS1 Gene

No Compound Related Data Available

Transcripts for AFF1-AS1 Gene

mRNA/cDNA for AFF1-AS1 Gene

(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for AFF1-AS1 Gene

No ASD Table

Relevant External Links for AFF1-AS1 Gene

GeneLoc Exon Structure for
AFF1-AS1
ECgene alternative splicing isoforms for
AFF1-AS1

Expression for AFF1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AFF1-AS1 Gene

Orthologs for AFF1-AS1 Gene

No data available for Orthologs and Evolution for AFF1-AS1 Gene

Paralogs for AFF1-AS1 Gene

No data available for Paralogs for AFF1-AS1 Gene

Variants for AFF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for AFF1-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000000112 -- 86,931,361(-) C/T intron_variant
rs1000082113 -- 86,936,184(-) G/A upstream_transcript_variant
rs1000482326 -- 86,926,805(-) G/A intron_variant
rs1001013817 -- 86,931,409(-) T/C intron_variant
rs1001157783 -- 86,932,299(-) A/G intron_variant

Additional Variant Information for AFF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AFF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AFF1-AS1 Gene

Disorders for AFF1-AS1 Gene

Additional Disease Information for AFF1-AS1

No disorders were found for AFF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AFF1-AS1 Gene

Publications for AFF1-AS1 Gene

  1. A high-density genome-wide association screen of sporadic ALS in US veterans. (PMID: 22470424) Kwee LC … Hauser MA (PloS one 2012) 3 58

Products for AFF1-AS1 Gene

Sources for AFF1-AS1 Gene

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