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Aliases for AFF1-AS1 Gene
Subcategory (RNA class) for AFF1-AS1 Gene
lncRNA
Quality Score for this RNA gene is
13
Previous GeneCards Identifiers for AFF1-AS1 Gene
- GC04M086925
- GC04M086927
- GC04M086877
Summaries for AFF1-AS1 Gene
GeneCards Summary for AFF1-AS1 Gene
AFF1-AS1 (AFF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for AFF1-AS1 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AFF1-AS1 Gene
Genomics for AFF1-AS1 Gene
GeneHancer (GH) Regulatory Elements for AFF1-AS1 Gene
Promoters and enhancers for AFF1-AS1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH04J086933 | Promoter/Enhancer | 2.2 | EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER | 0.6 | -2.6 | -2564 | 8 | ZNF24 ZBTB40 CTCF RBPJ SMARCE1 POLR2A NR2F1 CREB1 MIXL1 ZNF362 | AFF1 C4orf36 ENSG00000284968 ENSG00000285458 ENSG00000243312 ENSG00000248196 ENSG00000251411 MAPK10 SLC10A6 AFF1-AS1 | |
| GH04J086917 | Promoter/Enhancer | 1.9 | EPDnew FANTOM5 Ensembl ENCODE dbSUPER | 0.4 | +12.3 | 12349 | 14.2 | ZBTB40 CTCF SMARCE1 POLR2A CREB1 MIXL1 CC2D1A NFYC HLF DACH1 | C4orf36 ENSG00000251411 AFF1 HSD17B13 PTPN13 HSD17B11 LOC260422 AFF1-AS1 ENSG00000284968 ENSG00000285458 | |
| GH04J086931 | Enhancer | 0.2 | Ensembl | 0.6 | +3.4 | 3449 | 0.4 | ENSG00000251411 AFF1 AFF1-AS1 ENSG00000284968 ENSG00000285458 LOC260422 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around AFF1-AS1 on UCSC Golden Path with GeneCards custom track
Genomic Locations for AFF1-AS1 Gene
Genomic Locations for AFF1-AS1 Gene
- chr4:86,924,894-86,934,850
- (GRCh38/hg38)
- Size:
- 9,957 bases
- Orientation:
- Minus strand
- chr4:87,846,046-87,856,002
- (GRCh37/hg19)
- Size:
- 9,957 bases
- Orientation:
- Minus strand
Genomic View for AFF1-AS1 Gene
Genes around AFF1-AS1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 4q21.3 by HGNC
- 4q21.3 by Entrez Gene
AFF1-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for AFF1-AS1 Gene
Proteins for AFF1-AS1 Gene
Post-translational modifications for AFF1-AS1 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for AFF1-AS1
- Origene Custom Protein Services for AFF1-AS1
No data available for DME Specific Peptides for AFF1-AS1 Gene
Domains & Families for AFF1-AS1 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AFF1-AS1 Gene
Function for AFF1-AS1 Gene
Phenotypes From GWAS Catalog for AFF1-AS1 Gene
Phenotypes for AFF1-AS1 Gene
- GenomeRNAi human phenotypes for AFF1-AS1:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
- Origene sirna products in human, mouse, rat for AFF1-AS1
- Browse OriGene Inhibitory RNA Products For AFF1-AS1
Clone Products
-
OriGene ORF clones in rat for AFF1-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AFF1-AS1 Gene
Localization for AFF1-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AFF1-AS1 Gene
Transcripts for AFF1-AS1 Gene
mRNA/cDNA for AFF1-AS1 Gene
- (1) REFSEQ mRNAs :
- (5) RNACentral transcripts :
- (5) LNCipedia transcripts :
- (1) LncBook transcripts :
CRISPR Products
- Browse CRISPR knockouts for AFF1-AS1
miRNA Products
Inhibitory RNA Products
- Origene sirna products in human, mouse, rat for AFF1-AS1
- Browse OriGene Inhibitory RNA Products For AFF1-AS1
Clone Products
-
OriGene ORF clones in rat for AFF1-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
Expression for AFF1-AS1 Gene
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AFF1-AS1 Gene
Orthologs for AFF1-AS1 Gene
No data available for Orthologs and Evolution for AFF1-AS1 Gene
Paralogs for AFF1-AS1 Gene
No data available for Paralogs for AFF1-AS1 Gene
Variants for AFF1-AS1 Gene
| SNP ID | Clin | Chr 04 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000000112 | -- | 86,931,361(-) | C/T | intron_variant | |
| rs1000082113 | -- | 86,936,184(-) | G/A/T | upstream_transcript_variant | |
| rs1000482326 | -- | 86,926,805(-) | G/A | intron_variant | |
| rs1001013817 | -- | 86,931,409(-) | T/C | intron_variant | |
| rs1001157783 | -- | 86,932,299(-) | A/G | intron_variant |
Additional Variant Information for AFF1-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- AFF1-AS1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AFF1-AS1 Gene
Disorders for AFF1-AS1 Gene
Additional Disease Information for AFF1-AS1
No disorders were found for AFF1-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AFF1-AS1 Gene
Publications for AFF1-AS1 Gene
- A high-density genome-wide association screen of sporadic ALS in US veterans. (PMID: 22470424) Kwee LC … Hauser MA (PloS one 2012) 3 56
No data available for External Links for AFF1-AS1 Gene
Products for AFF1-AS1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for AFF1-AS1
- Origene Custom Protein Services for AFF1-AS1
- Origene sirna products in human, mouse, rat for AFF1-AS1
- Browse OriGene Inhibitory RNA Products For AFF1-AS1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for AFF1-AS1
- OriGene ORF clones in rat for AFF1-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For AFF1-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for AFF1-AS1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for AFF1-AS1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for AFF1-AS1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for AFF1-AS1
Sources for AFF1-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource