Free for academic non-profit institutions. Other users need a Commercial license

Aliases for AFAP1-AS1 Gene

Subcategory (RNA class) for AFAP1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AFAP1-AS1 Gene

  • AFAP1 Antisense RNA 1 2 3 5
  • AFAP1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • AFAP1 Antisense RNA (Non-Protein Coding) 2
  • AFAP1-AS 3
  • AFAP1AS 3

External Ids for AFAP1-AS1 Gene

Previous HGNC Symbols for AFAP1-AS1 Gene

  • AFAP1AS
  • AFAP1-AS

Summaries for AFAP1-AS1 Gene

Entrez Gene Summary for AFAP1-AS1 Gene

  • This gene produces a long non-coding RNA that is overexpressed in tumor cells and may promote cancer cell metastasis. [provided by RefSeq, Dec 2017]

GeneCards Summary for AFAP1-AS1 Gene

AFAP1-AS1 (AFAP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for AFAP1-AS1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AFAP1-AS1 Gene

Genomics for AFAP1-AS1 Gene

GeneHancer (GH) Regulatory Elements for AFAP1-AS1 Gene

Promoters and enhancers for AFAP1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I007753 Enhancer 0.6 ENCODE 550.8 -0.4 -419 0.6 HDAC1 SMAD5 L3MBTL2 MNT ZEB2 ELF1 E4F1 SP1 POLR2B ZNF766 AFAP1-AS1 GC04M007519
GH04I007758 Enhancer 0.8 Ensembl ENCODE 14.1 +5.7 5650 2.2 MAFG E4F1 ZNF316 POLR2A NFE2 EMSY MAFK NFE2L2 PIR46874 GC04M007761 AFAP1 AFAP1-AS1
GH04I007802 Enhancer 1.4 Ensembl ENCODE dbSUPER 7.7 +57.3 57294 16.8 PKNOX1 ATF1 FOXA2 ARID4B SIN3A DMAP1 ZNF48 ETS1 ZNF143 FOS AFAP1 AFAP1-AS1 ACOX3 PIR60658 GC04M007832
GH04I007778 Enhancer 1.1 Ensembl ENCODE dbSUPER 8 +28.0 28043 8.1 MEIS2 IRF2 JUN ETV1 ZFHX2 EGR1 POLR2A RCOR1 RUNX3 CHD2 AFAP1 AFAP1-AS1 PIR60658 GC04M007832
GH04I007765 Enhancer 0.6 ENCODE 10.8 +12.2 12236 1.8 SOX5 CEBPB CEBPG RARA SKI CEBPA TCF7 BCL6 NR2F6 SMAD4 AFAP1-AS1 PIR60658 GC04M007832 AFAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around AFAP1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AFAP1-AS1 Gene

Genomic Locations for AFAP1-AS1 Gene
chr4:7,754,090-7,778,928
(GRCh38/hg38)
Size:
24,839 bases
Orientation:
Plus strand
chr4:7,755,817-7,780,655
(GRCh37/hg19)

Genomic View for AFAP1-AS1 Gene

Genes around AFAP1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AFAP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AFAP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AFAP1-AS1 Gene

Proteins for AFAP1-AS1 Gene

Post-translational modifications for AFAP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AFAP1-AS1 Gene

Domains & Families for AFAP1-AS1 Gene

Gene Families for AFAP1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AFAP1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AFAP1-AS1 Gene

Function for AFAP1-AS1 Gene

Phenotypes From GWAS Catalog for AFAP1-AS1 Gene

Phenotypes for AFAP1-AS1 Gene

GenomeRNAi human phenotypes for AFAP1-AS1:
genes like me logo Genes that share phenotypes with AFAP1-AS1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AFAP1-AS1 Gene

Localization for AFAP1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for AFAP1-AS1 gene
Compartment Confidence
cytoskeleton 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AFAP1-AS1 Gene

Pathways & Interactions for AFAP1-AS1 Gene

SuperPathways for AFAP1-AS1 Gene

No Data Available

Interacting Proteins for AFAP1-AS1 Gene

Gene Ontology (GO) - Biological Process for AFAP1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AFAP1-AS1 Gene

Drugs & Compounds for AFAP1-AS1 Gene

No Compound Related Data Available

Transcripts for AFAP1-AS1 Gene

mRNA/cDNA for AFAP1-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AFAP1-AS1 Gene

AFAP1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for AFAP1-AS1 Gene

No ASD Table

Relevant External Links for AFAP1-AS1 Gene

GeneLoc Exon Structure for
AFAP1-AS1
ECgene alternative splicing isoforms for
AFAP1-AS1

Expression for AFAP1-AS1 Gene

SOURCE GeneReport for Unigene cluster for AFAP1-AS1 Gene:

Hs.663029
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AFAP1-AS1 Gene

Orthologs for AFAP1-AS1 Gene

Evolution for AFAP1-AS1 Gene

ENSEMBL:
Gene Tree for AFAP1-AS1 (if available)
TreeFam:
Gene Tree for AFAP1-AS1 (if available)

No data available for Orthologs for AFAP1-AS1 Gene

Paralogs for AFAP1-AS1 Gene

No data available for Paralogs for AFAP1-AS1 Gene

Variants for AFAP1-AS1 Gene

Sequence variations from dbSNP and Humsavar for AFAP1-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000041405 -- 7,773,609(+) T/G non_coding_transcript_variant
rs1000059153 -- 7,770,203(+) A/G intron_variant
rs1000136565 -- 7,766,981(+) G/C intron_variant
rs1000155005 -- 7,755,525(+) A/G intron_variant
rs1000345550 -- 7,756,479(+) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for AFAP1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2727074 CNV deletion 23290073
esv2727075 CNV deletion 23290073
esv2727076 CNV deletion 23290073
esv2727077 CNV deletion 23290073
esv2727078 CNV deletion 23290073
esv2727079 CNV deletion 23290073
esv34196 OTHER inversion 12058347
nsv1117961 CNV deletion 24896259
nsv1121623 CNV deletion 24896259
nsv1126034 CNV deletion 24896259
nsv1130812 CNV deletion 24896259
nsv1139213 CNV deletion 24896259
nsv822468 CNV gain 20364138

Additional Variant Information for AFAP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AFAP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AFAP1-AS1 Gene

Disorders for AFAP1-AS1 Gene

Additional Disease Information for AFAP1-AS1

No disorders were found for AFAP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AFAP1-AS1 Gene

Publications for AFAP1-AS1 Gene

  1. Long noncoding RNA AFAP1-AS1 indicates a poor prognosis of hepatocellular carcinoma and promotes cell proliferation and invasion via upregulation of the RhoA/Rac2 signaling. (PMID: 26892468) Zhang JY … Xu JM (International journal of oncology 2016) 2 3 58
  2. Hypomethylation of noncoding DNA regions and overexpression of the long noncoding RNA, AFAP1-AS1, in Barrett's esophagus and esophageal adenocarcinoma. (PMID: 23333711) Wu W … Meltzer SJ (Gastroenterology 2013) 2 3 58
  3. AFAP1-AS1: A novel oncogenic long non-coding RNA in human cancers. (PMID: 29057544) Zhang F … Huang W (Cell proliferation 2018) 3 58
  4. Co-expression of AFAP1-AS1 and PD-1 predicts poor prognosis in nasopharyngeal carcinoma. (PMID: 28380458) Tang Y … Zeng Z (Oncotarget 2017) 3 58
  5. Long Noncoding RNA AFAP1-AS1 Promotes Cell Proliferation and Apoptosis of Gastric Cancer Cells via PTEN/p-AKT Pathway. (PMID: 28451917) Guo JQ … Guo GX (Digestive diseases and sciences 2017) 3 58

Products for AFAP1-AS1 Gene

Sources for AFAP1-AS1 Gene

Content
Loading form....