AF480515 Gene (RNA Gene)

 

GC05P034055
GIFtS:
2
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Aliases for AF480515 Gene

Subcategory (RNA class) for AF480515 Gene

miRNA

Number of RNA Genes sources:

1 / 17

Aliases for AF480515 Gene

No Aliases found

No data available for External Ids for AF480515 Gene

Summaries for AF480515 Gene

GeneCards Summary for AF480515 Gene

AF480515 is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for AF480515 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AF480515 Gene

Genomics for AF480515 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for AF480515 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH05J034051 Enhancer 0.6 Ensembl ENCODE 600.7 -1.8 -1800 3.4 EZH2 JUND ZBTB40 SMARCA4 AF480515 AMACR lnc-RXFP3-1 C1QTNF3-AMACR C1QTNF3
GH05J034059 Enhancer 0.9 Ensembl ENCODE 0.4 +6.4 6360 3.9 GATAD2A REST PRDM1 RXRB SP1 CEBPA FOXA2 ZNF585B ATF3 YY1 BRIX1 AMACR AF480515 ENSG00000278900 C1QTNF3-AMACR C1QTNF3
GH05J034076 Enhancer 0.5 Ensembl 0.4 +21.9 21859 0.9 ZNF629 ZNF561 CEBPB ZNF366 ZNF843 PRDM6 ZSCAN21 PKNOX1 AMACR AF480515 ENSG00000278900 C1QTNF3-AMACR C1QTNF3
GH05J034064 Promoter 0.3 EPDnew 0.4 +9.2 9180 0.1 C1QTNF3 AF480515 ENSG00000278900 AMACR C1QTNF3-AMACR
GH05J034082 Enhancer 0.2 Ensembl 0.3 +27.4 27400 0.6 AMACR ENSG00000278900 AF480515 C1QTNF3-AMACR C1QTNF3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AF480515 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AF480515 Gene

Genomic Locations for AF480515 Gene
chr5:34,055,101-34,055,116
(GRCh38/hg38)
Size:
16 bases
Orientation:
Plus strand

Genomic View for AF480515 Gene

Genes around AF480515 on UCSC Golden Path with GeneCards custom track
AF480515 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

AF480515 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AF480515 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for AF480515 Gene

Proteins for AF480515 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for AF480515 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AF480515 Gene

Domains & Families for AF480515 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AF480515 Gene

Function for AF480515 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AF480515 Gene

Localization for AF480515 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AF480515 Gene

Pathways & Interactions for AF480515 Gene

PathCards logo

SuperPathways for AF480515 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AF480515 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AF480515 Gene

Drugs & Compounds for AF480515 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for AF480515 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AF480515 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005898D0_9606 miRNA 16 1

ENA: AF480515.1:1..16:ncRNA,

AF480515 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for AF480515 Gene

No ASD Table

Relevant External Links for AF480515 Gene

GeneLoc Exon Structure for
AF480515

No data available for mRNA/cDNA for AF480515 Gene

Expression for AF480515 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AF480515 Gene

Orthologs for AF480515 Gene

No data available for Orthologs and Evolution for AF480515 Gene

Paralogs for AF480515 Gene

No data available for Paralogs for AF480515 Gene

Variants for AF480515 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for AF480515 Gene

Disorders for AF480515 Gene

No disorders were found for AF480515 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AF480515 Gene

Publications for AF480515 Gene

No publications were found for AF480515 Gene.

No data available for Mastermind for AF480515 Gene

Products for AF480515 Gene

Sources for AF480515 Gene