Aliases for AF288738 Gene

Subcategory (RNA class) for AF288738 Gene

rRNA

Number of RNA Genes sources:

1 / 17

Aliases for AF288738 Gene

No Aliases found

No data available for External Ids for AF288738 Gene

Summaries for AF288738 Gene

GeneCards Summary for AF288738 Gene

AF288738 is an RNA Gene, and is affiliated with the rRNA class.

Additional gene information for AF288738 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AF288738 Gene

Genomics for AF288738 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AF288738 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J055017 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +20.4 20372 10.2 REST ZIC2 ZSCAN4 RBFOX2 PATZ1 SP1 EZH2 ZNF341 ZFX CEBPA EGFR LOC105375284 AF288738 LANCL2
GH07J055060 Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.3 -27.1 -27115 19.4 SP1 GATAD2A ATF7 PRDM10 ZNF629 REST TFE3 SOX13 RCOR2 BACH1 EGFR EGFR-AS1 SEC61G AF288738 NONHSAG047619.2 LANCL2
GH07J055043 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -7.5 -7503 14.8 PRDM10 REST CTCF RCOR2 FOXA1 RXRB RAD21 SP1 CEBPA CEBPB EGFR EGFR-AS1 AF288738 NONHSAG047619.2 LANCL2
GH07J055030 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +12.0 12027 3.4 GATAD2A ATF7 RXRB SP1 CEBPA ETS1 CEBPB FOXA2 MAFF ATF3 EGFR LOC105375284 AF288738 LANCL2
GH07J055080 Enhancer 1.4 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.3 -41.7 -41727 8 BACH1 LARP7 ZIC2 TCF12 IKZF2 TRIM22 GABPA CEBPA EED SOX13 EGFR EGFR-AS1 AF288738 NONHSAG047619.2 LANCL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AF288738 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AF288738 Gene

Genomic Locations for AF288738 Gene
chr7:55,043,103-55,043,141
(GRCh38/hg38)
Size:
39 bases
Orientation:
Minus strand

Genomic View for AF288738 Gene

Genes around AF288738 on UCSC Golden Path with GeneCards custom track
AF288738 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

AF288738 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AF288738 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for AF288738 Gene

Proteins for AF288738 Gene

Post-translational modifications for AF288738 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AF288738 Gene

Domains & Families for AF288738 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AF288738 Gene

Function for AF288738 Gene

Phenotypes From GWAS Catalog for AF288738 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AF288738 Gene

Localization for AF288738 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AF288738 Gene

Pathways & Interactions for AF288738 Gene

PathCards logo

SuperPathways for AF288738 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AF288738 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AF288738 Gene

Drugs & Compounds for AF288738 Gene

No Compound Related Data Available

Transcripts for AF288738 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AF288738 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000374AA0_9606 rRNA 39 1

ENA: AF288738.1:33210..33248:rRNA,

AF288738 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for AF288738 Gene

No ASD Table

Relevant External Links for AF288738 Gene

GeneLoc Exon Structure for
AF288738

No data available for mRNA/cDNA for AF288738 Gene

Expression for AF288738 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AF288738 Gene

Orthologs for AF288738 Gene

No data available for Orthologs and Evolution for AF288738 Gene

Paralogs for AF288738 Gene

No data available for Paralogs for AF288738 Gene

Variants for AF288738 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for AF288738 Gene

Disorders for AF288738 Gene

No disorders were found for AF288738 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AF288738 Gene

Publications for AF288738 Gene

No publications were found for AF288738 Gene.

No data available for Mastermind for AF288738 Gene

Products for AF288738 Gene

Sources for AF288738 Gene