Aliases for AF040097 Gene

Subcategory (RNA class) for AF040097 Gene

misc_RNA

Number of RNA Genes sources:

1 / 14

Aliases for AF040097 Gene

No Aliases found

No data available for External Ids for AF040097 Gene

Summaries for AF040097 Gene

GeneCards Summary for AF040097 Gene

AF040097 is an RNA Gene, and is affiliated with the misc_RNA class.

Additional gene information for AF040097 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AF040097 Gene

Genomics for AF040097 Gene

GeneHancer (GH) Regulatory Elements for AF040097 Gene

Promoters and enhancers for AF040097 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J013592 Enhancer 0.7 ENCODE dbSUPER 500.7 +1.2 1204 1.8 TEAD4 TRIM28 JUND FOS CEBPB EZH2 STAT3 AF040097 lnc-LRRC38-6 PDPN
GH01J013583 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +9.9 9943 4.7 ZSCAN5C TEAD4 ZIC2 POLR2A ZBTB26 SAP30 HDAC2 ZNF341 ZNF585B BCL11A PDPN AF040097 lnc-LRRC38-6
GH01J013590 Enhancer 0.6 FANTOM5 dbSUPER 0.7 +4.3 4315 0.3 FOS MYC STAT3 PDPN PRDM2 AF040097 lnc-LRRC38-6
GH01J013599 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 -5.4 -5395 2.4 FOS DPF2 SIN3A SP1 MTA1 FOXA1 STAT3 PDPN FJ601684-006 AF040097 lnc-LRRC38-6
GH01J013589 Enhancer 0.4 Ensembl dbSUPER 0.4 +5.5 5505 0.2 EZH2 AF040097 PDPN lnc-LRRC38-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AF040097 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AF040097 Gene

Genomic Locations for AF040097 Gene
chr1:13,594,588-13,595,006
(GRCh38/hg38)
Size:
419 bases
Orientation:
Minus strand

Genomic View for AF040097 Gene

Genes around AF040097 on UCSC Golden Path with GeneCards custom track

AF040097 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AF040097 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for AF040097 Gene

Proteins for AF040097 Gene

Post-translational modifications for AF040097 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AF040097 Gene

Domains & Families for AF040097 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AF040097 Gene

Function for AF040097 Gene

miRNA for AF040097 Gene

miRTarBase miRNAs that target AF040097

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for AF040097 Gene

Localization for AF040097 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AF040097 Gene

Pathways & Interactions for AF040097 Gene

PathCards logo

SuperPathways for AF040097 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for AF040097 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AF040097 Gene

Drugs & Compounds for AF040097 Gene

No Compound Related Data Available

Transcripts for AF040097 Gene

mRNA/cDNA for AF040097 Gene

1 RNACentral transcripts :
1 ENA transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for AF040097 Gene

No ASD Table

Relevant External Links for AF040097 Gene

GeneLoc Exon Structure for
AF040097

Expression for AF040097 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AF040097 Gene

Orthologs for AF040097 Gene

No data available for Orthologs and Evolution for AF040097 Gene

Paralogs for AF040097 Gene

No data available for Paralogs for AF040097 Gene

Variants for AF040097 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for AF040097 Gene

Disorders for AF040097 Gene

No disorders were found for AF040097 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AF040097 Gene

Publications for AF040097 Gene

No publications were found for AF040097 Gene.

No data available for Mastermind for AF040097 Gene

Products for AF040097 Gene

Sources for AF040097 Gene