Aliases for ADPGK-AS1 Gene

Subcategory (RNA class) for ADPGK-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for ADPGK-AS1 Gene

  • ADPGK Antisense RNA 1 2 3 5
  • ADPGK Antisense RNA 1 (Non-Protein Coding) 2 3
  • ADPGK-AS1 2 170
  • HSALNG0107094 169
  • NONHSAG017366 94

External Ids for ADPGK-AS1 Gene

Previous GeneCards Identifiers for ADPGK-AS1 Gene

  • GC15P073075

Summaries for ADPGK-AS1 Gene

GeneCards Summary for ADPGK-AS1 Gene

ADPGK-AS1 (ADPGK Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ADPGK-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADPGK-AS1 Gene

Genomics for ADPGK-AS1 Gene

GeneHancer (GH) Regulatory Elements for ADPGK-AS1 Gene

Promoters and enhancers for ADPGK-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J072781 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.3 +33.1 33080 6.1 ZNF785 SIN3A ZNF24 ZBTB40 SP1 CTCF SIX5 ZBTB6 FOXA1 SMARCE1 ADPGK lnc-HIGD2B-2 ENSG00000261187 ARIH1 HEXA MYO9A ENSG00000261460 PARP6 BBS4 TMEM202-AS1
GH15J072798 Enhancer 0.3 Ensembl 4.9 +47.7 47732 1.4 HLF ZSCAN4 ADPGK-AS1 ENSG00000260037 piR-56759-186 ADPGK
GH15J072778 Enhancer 0.2 dbSUPER 6.4 +27.4 27439 1.2 ADPGK ADPGK-AS1 lnc-HIGD2B-2
GH15J072789 Enhancer 0.2 Ensembl 6.1 +38.9 38931 1.8 ADPGK ADPGK-AS1 piR-56759-186
GH15J072751 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.6 +2.5 2491 3.9 PRDM1 POLR2A ADPGK BBS4 ADPGK-AS1 lnc-HIGD2B-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADPGK-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADPGK-AS1 Gene

Genomic Locations for ADPGK-AS1 Gene
chr15:72,751,369-72,798,199
(GRCh38/hg38)
Size:
46,831 bases
Orientation:
Plus strand
chr15:73,075,176-73,090,540
(GRCh37/hg19)
Size:
15,365 bases
Orientation:
Plus strand

Genomic View for ADPGK-AS1 Gene

Genes around ADPGK-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADPGK-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADPGK-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADPGK-AS1 Gene

Proteins for ADPGK-AS1 Gene

Post-translational modifications for ADPGK-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADPGK-AS1 Gene

Domains & Families for ADPGK-AS1 Gene

Gene Families for ADPGK-AS1 Gene

genes like me logo Genes that share domains with ADPGK-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADPGK-AS1 Gene

Function for ADPGK-AS1 Gene

Phenotypes From GWAS Catalog for ADPGK-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADPGK-AS1 Gene

Localization for ADPGK-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADPGK-AS1 Gene

Pathways & Interactions for ADPGK-AS1 Gene

PathCards logo

SuperPathways for ADPGK-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADPGK-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADPGK-AS1 Gene

Drugs & Compounds for ADPGK-AS1 Gene

No Compound Related Data Available

Transcripts for ADPGK-AS1 Gene

mRNA/cDNA for ADPGK-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(9) RNACentral transcripts :
(5) LNCipedia transcripts :
(7) NONCODE transcripts :
(3) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ADPGK-AS1 Gene

No ASD Table

Relevant External Links for ADPGK-AS1 Gene

GeneLoc Exon Structure for
ADPGK-AS1
ECgene alternative splicing isoforms for
ADPGK-AS1

Expression for ADPGK-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADPGK-AS1 Gene

SOURCE GeneReport for Unigene cluster for ADPGK-AS1 Gene:

Hs.562587
genes like me logo Genes that share expression patterns with ADPGK-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADPGK-AS1 Gene

Orthologs for ADPGK-AS1 Gene

Evolution for ADPGK-AS1 Gene

ENSEMBL:
Gene Tree for ADPGK-AS1 (if available)
TreeFam:
Gene Tree for ADPGK-AS1 (if available)

No data available for Orthologs for ADPGK-AS1 Gene

Paralogs for ADPGK-AS1 Gene

No data available for Paralogs for ADPGK-AS1 Gene

Variants for ADPGK-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADPGK-AS1 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000000920 -- 72,789,870(+) G/A intron_variant
rs1000059638 -- 72,783,074(+) A/G non_coding_transcript_variant
rs1000084073 -- 72,794,935(+) C/A/T intron_variant
rs1000090223 -- 72,782,773(+) C/T upstream_transcript_variant
rs1000497223 -- 72,784,203(+) T/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ADPGK-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2760039 CNV gain+loss 17122850
nsv1121512 CNV deletion 24896259
nsv428307 CNV gain 18775914

Additional Variant Information for ADPGK-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADPGK-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADPGK-AS1 Gene

Disorders for ADPGK-AS1 Gene

Additional Disease Information for ADPGK-AS1

No disorders were found for ADPGK-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADPGK-AS1 Gene

Publications for ADPGK-AS1 Gene

  1. Long noncoding RNA ADPGK-AS1 promotes cell proliferation, migration, and EMT process through regulating miR-3196/OTX1 axis in breast cancer. (PMID: 31264061) Yang J … Ding J (In vitro cellular & developmental biology. Animal 2019) 2 3 56
  2. LncRNA ADPGK-AS1 promotes pancreatic cancer progression through activating ZEB1-mediated epithelial-mesenchymal transition. (PMID: 29667486) Song S … Wang H (Cancer biology & therapy 2018) 2 3 56
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 56
  4. Genome-wide association analyses identify 18 new loci associated with serum urate concentrations. (PMID: 23263486) Köttgen A … Gieger C (Nature genetics 2013) 3 56

Products for ADPGK-AS1 Gene

Sources for ADPGK-AS1 Gene