Aliases for ADPGK-AS1 Gene

Subcategory (RNA class) for ADPGK-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ADPGK-AS1 Gene

  • ADPGK Antisense RNA 1 2 3 5
  • ADPGK-AS1 2 5 165
  • ADPGK Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG017366.2 91
  • HSALNG0107094 164

External Ids for ADPGK-AS1 Gene

Previous GeneCards Identifiers for ADPGK-AS1 Gene

  • GC15P073075
  • GC15P072782
  • GC15P072786

Summaries for ADPGK-AS1 Gene

GeneCards Summary for ADPGK-AS1 Gene

ADPGK-AS1 (ADPGK Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ADPGK-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADPGK-AS1 Gene

Genomics for ADPGK-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ADPGK-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J072781 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.3 +33.1 33080 6.1 BRCA1 SP1 HNRNPL CREB1 GATAD2A CTCF ATF7 PRDM10 ZNF629 SIX5 ADPGK lnc-HIGD2B-2 ENSG00000261187 MYO9A HEXA PARP6 ENSG00000261460 ARIH1 BBS4 CELF6
GH15J072778 Enhancer 0.3 dbSUPER 6.4 +27.4 27439 1.2 EGR2 ADPGK ADPGK-AS1 lnc-HIGD2B-2 HIGD2B
GH15J072798 Enhancer 0.3 Ensembl 4.9 +47.7 47732 1.4 ZSCAN4 HLF ADPGK-AS1 ENSG00000260037 piR-56759-186 ADPGK NEO1
GH15J072789 Enhancer 0.2 Ensembl 6.1 +38.9 38931 1.8 ADPGK ADPGK-AS1 piR-56759-186 NEO1
GH15J072751 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.7 +2.5 2491 3.9 PRDM1 SPI1 POLR2A EGR2 TAF1 ADPGK BBS4 ADPGK-AS1 lnc-HIGD2B-2 HIGD2B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADPGK-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ADPGK-AS1 Gene

Genomic Locations for ADPGK-AS1 Gene
chr15:72,751,369-72,798,199
(GRCh38/hg38)
Size:
46,831 bases
Orientation:
Plus strand
chr15:73,075,176-73,090,540
(GRCh37/hg19)
Size:
15,365 bases
Orientation:
Plus strand

Genomic View for ADPGK-AS1 Gene

Genes around ADPGK-AS1 on UCSC Golden Path with GeneCards custom track
ADPGK-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ADPGK-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADPGK-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADPGK-AS1 Gene

Proteins for ADPGK-AS1 Gene

Post-translational modifications for ADPGK-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADPGK-AS1 Gene

Domains & Families for ADPGK-AS1 Gene

Gene Families for ADPGK-AS1 Gene

genes like me logo Genes that share domains with ADPGK-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADPGK-AS1 Gene

Function for ADPGK-AS1 Gene

Phenotypes From GWAS Catalog for ADPGK-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADPGK-AS1 Gene

Localization for ADPGK-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADPGK-AS1 Gene

Pathways & Interactions for ADPGK-AS1 Gene

PathCards logo

SuperPathways for ADPGK-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADPGK-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ADPGK-AS1 Gene

Drugs & Compounds for ADPGK-AS1 Gene

No Compound Related Data Available

Transcripts for ADPGK-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ADPGK-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004A7F77_9606 lncRNA 2730 4

HGNC: 44144,

RefSeq: NR_040107,

Ensembl: ENST00000563592 (view in UCSC) ,

NONCODE: NONHSAT047125.2,

URS00001E67FC_9606 lncRNA 765 3

Ensembl: ENST00000566745 (view in UCSC) ,

LNCipedia: ADPGK-AS1:5,

NONCODE: NONHSAT047126.2,

URS0000EEBE56_9606 lncRNA 2492 1

Ensembl: ENST00000670622 (view in UCSC) ,

URS00008B72BD_9606 lncRNA 1436 3

LncBook: HSALNT0222495,

LNCipedia: ADPGK-AS1:7,

NONCODE: NONHSAT047128.2,

URS00009B239C_9606 lncRNA 731 2

LncBook: HSALNT0222491,

NONCODE: NONHSAT171005.1,

ADPGK-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ADPGK-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ADPGK-AS1 Gene

No ASD Table

Relevant External Links for ADPGK-AS1 Gene

GeneLoc Exon Structure for
ADPGK-AS1

Expression for ADPGK-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ADPGK-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ADPGK-AS1

SOURCE GeneReport for Unigene cluster for ADPGK-AS1 Gene:

Hs.562587
genes like me logo Genes that share expression patterns with ADPGK-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADPGK-AS1 Gene

Orthologs for ADPGK-AS1 Gene

Evolution for ADPGK-AS1 Gene

ENSEMBL:
Gene Tree for ADPGK-AS1 (if available)
TreeFam:
Gene Tree for ADPGK-AS1 (if available)

No data available for Orthologs for ADPGK-AS1 Gene

Paralogs for ADPGK-AS1 Gene

No data available for Paralogs for ADPGK-AS1 Gene

Variants for ADPGK-AS1 Gene

Additional dbSNP identifiers (rs#s) for ADPGK-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ADPGK-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2760039 CNV gain+loss 17122850
nsv1121512 CNV deletion 24896259
nsv428307 CNV gain 18775914

Additional Variant Information for ADPGK-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADPGK-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ADPGK-AS1 Gene

Disorders for ADPGK-AS1 Gene

No disorders were found for ADPGK-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADPGK-AS1 Gene

Publications for ADPGK-AS1 Gene

  1. Long noncoding RNA ADPGK-AS1 promotes cell proliferation, migration, and EMT process through regulating miR-3196/OTX1 axis in breast cancer. (PMID: 31264061) Yang J … Ding J (In vitro cellular & developmental biology. Animal 2019) 2 3
  2. LncRNA ADPGK-AS1 promotes pancreatic cancer progression through activating ZEB1-mediated epithelial-mesenchymal transition. (PMID: 29667486) Song S … Wang H (Cancer biology & therapy 2018) 2 3
  3. Upregulation of the long noncoding RNA ADPGK-AS1 promotes carcinogenesis and predicts poor prognosis in gastric cancer. (PMID: 30944080) Huang Z … Yang H (Biochemical and biophysical research communications 2019) 3
  4. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  5. Genome-wide association analyses identify 18 new loci associated with serum urate concentrations. (PMID: 23263486) Köttgen A … Gieger C (Nature genetics 2013) 3

Products for ADPGK-AS1 Gene

Sources for ADPGK-AS1 Gene