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Aliases for ADPGK-AS1 Gene

Subcategory (RNA class) for ADPGK-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ADPGK-AS1 Gene

  • ADPGK Antisense RNA 1 2 3 5
  • ADPGK Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for ADPGK-AS1 Gene

Previous GeneCards Identifiers for ADPGK-AS1 Gene

  • GC15P073075

Summaries for ADPGK-AS1 Gene

GeneCards Summary for ADPGK-AS1 Gene

ADPGK-AS1 (ADPGK Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ADPGK-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADPGK-AS1 Gene

Genomics for ADPGK-AS1 Gene

GeneHancer (GH) Regulatory Elements for ADPGK-AS1 Gene

Promoters and enhancers for ADPGK-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J072781 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 656.8 +1.8 1843 5.6 CLOCK MLX ZFP64 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 ADPGK ADPGK-AS1 ENSG00000261187 MYO9A BBS4 HEXA PARP6 LOC105370887 ARIH1 TMEM202
GH15J072796 Enhancer 1.3 Ensembl ENCODE dbSUPER 5.1 +14.2 14226 1.3 SIN3A GLI4 ZNF2 GLIS2 ZNF143 SP3 REST ZNF610 GLIS1 ZNF624 ENSG00000260037 ADPGK-AS1 ADPGK NPM1P42
GH15J072778 Enhancer 0.3 dbSUPER 6.8 -4.0 -4027 1.2 EGR2 ADPGK ADPGK-AS1 PIR32168
GH15J072774 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -7.7 -7746 1.4 IKZF1 CEBPB ELF1 IKZF2 MYC SPI1 BBS4 ADPGK-AS1 ADPGK PIR32168
GH15J072739 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -42.6 -42571 1.3 JUNB SP1 IKZF1 ETV6 ATF7 CREM RUNX3 IKZF2 BCLAF1 ADPGK ARIH1 PARP6 CELF6 PIR32168 ADPGK-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ADPGK-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADPGK-AS1 Gene

Genomic Locations for ADPGK-AS1 Gene
chr15:72,782,835-72,798,199
(GRCh38/hg38)
Size:
15,365 bases
Orientation:
Plus strand
chr15:73,075,176-73,090,540
(GRCh37/hg19)

Genomic View for ADPGK-AS1 Gene

Genes around ADPGK-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADPGK-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADPGK-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADPGK-AS1 Gene

Proteins for ADPGK-AS1 Gene

Post-translational modifications for ADPGK-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADPGK-AS1 Gene

Domains & Families for ADPGK-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ADPGK-AS1 Gene

Function for ADPGK-AS1 Gene

Phenotypes From GWAS Catalog for ADPGK-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADPGK-AS1 Gene

Localization for ADPGK-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADPGK-AS1 Gene

Pathways & Interactions for ADPGK-AS1 Gene

SuperPathways for ADPGK-AS1 Gene

No Data Available

Interacting Proteins for ADPGK-AS1 Gene

Gene Ontology (GO) - Biological Process for ADPGK-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADPGK-AS1 Gene

Drugs & Compounds for ADPGK-AS1 Gene

No Compound Related Data Available

Transcripts for ADPGK-AS1 Gene

mRNA/cDNA for ADPGK-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for ADPGK-AS1 Gene

ADPGK antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ADPGK-AS1 Gene

No ASD Table

Relevant External Links for ADPGK-AS1 Gene

GeneLoc Exon Structure for
ADPGK-AS1
ECgene alternative splicing isoforms for
ADPGK-AS1

Expression for ADPGK-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADPGK-AS1 Gene

SOURCE GeneReport for Unigene cluster for ADPGK-AS1 Gene:

Hs.562587
genes like me logo Genes that share expression patterns with ADPGK-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADPGK-AS1 Gene

Orthologs for ADPGK-AS1 Gene

Evolution for ADPGK-AS1 Gene

ENSEMBL:
Gene Tree for ADPGK-AS1 (if available)
TreeFam:
Gene Tree for ADPGK-AS1 (if available)

No data available for Orthologs for ADPGK-AS1 Gene

Paralogs for ADPGK-AS1 Gene

No data available for Paralogs for ADPGK-AS1 Gene

Variants for ADPGK-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADPGK-AS1 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000000920 -- 72,789,870(+) G/A intron_variant
rs1000059638 -- 72,783,074(+) A/G non_coding_transcript_variant
rs1000084073 -- 72,794,935(+) C/A/T intron_variant
rs1000090223 -- 72,782,773(+) C/T upstream_transcript_variant
rs1000497223 -- 72,784,203(+) T/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ADPGK-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2760039 CNV gain+loss 17122850
nsv1121512 CNV deletion 24896259
nsv428307 CNV gain 18775914

Additional Variant Information for ADPGK-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADPGK-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADPGK-AS1 Gene

Disorders for ADPGK-AS1 Gene

Additional Disease Information for ADPGK-AS1

No disorders were found for ADPGK-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADPGK-AS1 Gene

Publications for ADPGK-AS1 Gene

  1. LncRNA ADPGK-AS1 promotes pancreatic cancer progression through activating ZEB1-mediated epithelial-mesenchymal transition. (PMID: 29667486) Song S … Wang H (Cancer biology & therapy 2018) 2 3 58
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  3. Genome-wide association analyses identify 18 new loci associated with serum urate concentrations. (PMID: 23263486) Köttgen A … Gieger C (Nature genetics 2013) 3 58

Products for ADPGK-AS1 Gene

Sources for ADPGK-AS1 Gene

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