Aliases for ADNP-AS1 Gene

Subcategory (RNA class) for ADNP-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ADNP-AS1 Gene

  • ADNP Antisense RNA 1 2 3 5
  • ADNP-AS1 2 5 165
  • NONHSAG032018.2 91
  • HSALNG0130810 164

External Ids for ADNP-AS1 Gene

Summaries for ADNP-AS1 Gene

GeneCards Summary for ADNP-AS1 Gene

ADNP-AS1 (ADNP Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ADNP-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADNP-AS1 Gene

Genomics for ADNP-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ADNP-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J050928 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +0.8 837 5 ZNF221 BRCA1 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A CTCF ZBTB33 ATF7 ADNP ADNP-AS1 DPM1 ENSG00000232043 PTPN1 PSMD10P1 BCAS4 MOCS3 KRT18P4 CEBPB
GH20J051409 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.1 +483.4 483382 11.2 HNRNPL GATAD2A KDM1A RCOR2 ZIC2 RXRB IRF2 SP1 CEBPA FOXK2 NFATC2 ENSG00000232358 ADNP-AS1 ATP9A lnc-ATP9A-2 MIR3194 KCNG1
GH20J051398 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 4.7 +473.3 473294 8.2 CEBPG SP1 BACH1 TARDBP ZHX2 FOXA1 ZNF143 RELA IKZF2 TRIM22 NFATC2 ADNP ADNP-AS1 lnc-ATP9A-2 MIR3194 KCNG1
GH20J050913 Enhancer 0.8 ENCODE 0.4 -14.0 -13973 4.2 CREB1 YBX1 ZNF629 IKZF1 POLR2A JUND PRDM1 PKNOX1 ZNF24 HDAC1 PSMD10P1 BCAS4 ADNP ADNP-AS1
GH20J050919 Enhancer 0.6 ENCODE 0.4 -9.9 -9876 0.8 RFX1 ZIC2 ZBTB44 CEBPB ZBTB20 ZSCAN5C E4F1 FOSL1 NFIC CEBPG BCAS4 ADNP-AS1 PSMD10P1 ADNP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADNP-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ADNP-AS1 Gene

Genomic Locations for ADNP-AS1 Gene
chr20:50,929,642-50,951,278
(GRCh38/hg38)
Size:
21,637 bases
Orientation:
Plus strand
chr20:49,547,521-49,561,671
(GRCh37/hg19)
Size:
14,151 bases
Orientation:
Plus strand

Genomic View for ADNP-AS1 Gene

Genes around ADNP-AS1 on UCSC Golden Path with GeneCards custom track
ADNP-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ADNP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADNP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADNP-AS1 Gene

Proteins for ADNP-AS1 Gene

Post-translational modifications for ADNP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADNP-AS1 Gene

Domains & Families for ADNP-AS1 Gene

Gene Families for ADNP-AS1 Gene

genes like me logo Genes that share domains with ADNP-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADNP-AS1 Gene

Function for ADNP-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADNP-AS1 Gene

Localization for ADNP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADNP-AS1 Gene

Pathways & Interactions for ADNP-AS1 Gene

PathCards logo

SuperPathways for ADNP-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADNP-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ADNP-AS1 Gene

Drugs & Compounds for ADNP-AS1 Gene

No Compound Related Data Available

Transcripts for ADNP-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ADNP-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000055F641_9606 lncRNA 927 3

Ensembl: ENST00000558899 (view in UCSC) ,

LncBook: HSALNT0268709,

LNCipedia: ADNP-AS1:2,

URS000075E7BC_9606 lncRNA 924 2

HGNC: 51227,

RefSeq: NR_110009,

URS000075D8AD_9606 lncRNA 1028 1

RefSeq: NR_110007,

URS0000EEDD15_9606 lncRNA 1023 1

Ensembl: ENST00000655542 (view in UCSC) ,

URS0000EF160D_9606 lncRNA 993 1

Ensembl: ENST00000664246 (view in UCSC) ,

ADNP-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ADNP-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ADNP-AS1 Gene

No ASD Table

Relevant External Links for ADNP-AS1 Gene

GeneLoc Exon Structure for
ADNP-AS1

Expression for ADNP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ADNP-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ADNP-AS1

genes like me logo Genes that share expression patterns with ADNP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADNP-AS1 Gene

Orthologs for ADNP-AS1 Gene

Evolution for ADNP-AS1 Gene

ENSEMBL:
Gene Tree for ADNP-AS1 (if available)
TreeFam:
Gene Tree for ADNP-AS1 (if available)

No data available for Orthologs for ADNP-AS1 Gene

Paralogs for ADNP-AS1 Gene

No data available for Paralogs for ADNP-AS1 Gene

Variants for ADNP-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ADNP-AS1 Gene

SNP ID Clinical significance and condition Chr 20 pos Variation AA Info Type
650050 Uncertain Significance: Congenital disorder of glycosylation type 1E 50,935,152(+) T/C MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
658015 Uncertain Significance: Congenital disorder of glycosylation type 1E 50,936,247(+) T/G MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
704296 Likely Benign: Congenital disorder of glycosylation type 1E 50,936,139(+) G/A INTRON_VARIANT
716714 Likely Benign: not provided 50,936,205(+) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
728418 Likely Benign: not provided 50,936,157(+) A/G NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for ADNP-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ADNP-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1072547 CNV deletion 25765185
nsv1143987 CNV deletion 24896259
nsv834002 CNV loss 17160897
nsv954057 CNV deletion 24416366

Additional Variant Information for ADNP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADNP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADNP-AS1 Gene

Disorders for ADNP-AS1 Gene

Additional Disease Information for ADNP-AS1

No disorders were found for ADNP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADNP-AS1 Gene

Publications for ADNP-AS1 Gene

No publications were found for ADNP-AS1 Gene.

No data available for Mastermind for ADNP-AS1 Gene

Products for ADNP-AS1 Gene

Sources for ADNP-AS1 Gene