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Aliases for ADNP-AS1 Gene

Subcategory (RNA class) for ADNP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ADNP-AS1 Gene

  • ADNP Antisense RNA 1 2 3 5

External Ids for ADNP-AS1 Gene

Summaries for ADNP-AS1 Gene

GeneCards Summary for ADNP-AS1 Gene

ADNP-AS1 (ADNP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ADNP-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADNP-AS1 Gene

Genomics for ADNP-AS1 Gene

GeneHancer (GH) Regulatory Elements for ADNP-AS1 Gene

Promoters and enhancers for ADNP-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I050928 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.3 -272 4.5 CLOCK DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC SSRP1 ADNP ADNP-AS1 DPM1 CEBPB KRT18P4 MOCS3 ENSG00000232043 PTPN1 RNF114 BCAS4
GH20I051333 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.6 +406.3 406250 6.9 PKNOX1 FEZF1 IRF4 ZNF766 ZNF143 FOS JUNB ZC3H11A ZNF592 MEF2D ADNP DPM1 PSMD10P1 ENSG00000232358 ENSG00000232043 ADNP-AS1 ZFP64 LOC105372663 GC20M051206
GH20I051398 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 4.7 +472.0 471952 8.2 HDGF SMAD1 NFIB BMI1 BATF ZBTB7B IRF4 RAD21 ZNF207 ZNF143 NFATC2 ADNP ADNP-AS1 GC20M051426 LOC105372663
GH20I051411 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 4.3 +484.2 484234 6.9 ARNT ARID4B ZNF48 YY1 RUNX3 RXRA MXD4 MIER2 REST KAT8 NFATC2 ENSG00000232358 ADNP-AS1 GC20M051426 LOC105372663
GH20I050913 Enhancer 1 Ensembl ENCODE 0.4 -15.3 -15315 4.2 HDAC1 HDGF ATF1 PKNOX1 YBX1 BATF EGR1 ZSCAN5C SCRT2 ZNF207 PSMD10P1 BCAS4 ADNP ADNP-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ADNP-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADNP-AS1 Gene

Genomic Locations for ADNP-AS1 Gene
chr20:50,930,984-50,945,134
(GRCh38/hg38)
Size:
14,151 bases
Orientation:
Plus strand
chr20:49,547,521-49,561,671
(GRCh37/hg19)

Genomic View for ADNP-AS1 Gene

Genes around ADNP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADNP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADNP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADNP-AS1 Gene

Proteins for ADNP-AS1 Gene

Post-translational modifications for ADNP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADNP-AS1 Gene

Domains & Families for ADNP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ADNP-AS1 Gene

Function for ADNP-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADNP-AS1 Gene

Localization for ADNP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADNP-AS1 Gene

Pathways & Interactions for ADNP-AS1 Gene

SuperPathways for ADNP-AS1 Gene

No Data Available

Interacting Proteins for ADNP-AS1 Gene

Gene Ontology (GO) - Biological Process for ADNP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADNP-AS1 Gene

Drugs & Compounds for ADNP-AS1 Gene

No Compound Related Data Available

Transcripts for ADNP-AS1 Gene

mRNA/cDNA for ADNP-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ADNP-AS1 Gene

No ASD Table

Relevant External Links for ADNP-AS1 Gene

GeneLoc Exon Structure for
ADNP-AS1
ECgene alternative splicing isoforms for
ADNP-AS1

Expression for ADNP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADNP-AS1 Gene

genes like me logo Genes that share expression patterns with ADNP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADNP-AS1 Gene

Orthologs for ADNP-AS1 Gene

Evolution for ADNP-AS1 Gene

ENSEMBL:
Gene Tree for ADNP-AS1 (if available)
TreeFam:
Gene Tree for ADNP-AS1 (if available)

No data available for Orthologs for ADNP-AS1 Gene

Paralogs for ADNP-AS1 Gene

No data available for Paralogs for ADNP-AS1 Gene

Variants for ADNP-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADNP-AS1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs11480415 likely-benign, benign, Congenital disorder of glycosylation, not provided, Congenital disorder of glycosylation type 1E 50,935,243(+) /A/AA/AAA intron_variant
rs146262101 uncertain-significance, Congenital disorder of glycosylation 50,935,136(+) G/A intron_variant
rs369538517 likely-benign, Congenital disorder of glycosylation type 1E 50,935,231(+) T/C/G intron_variant
rs587777114 pathogenic, Congenital disorder of glycosylation type 1E 50,935,173(+) A/G intron_variant
rs587777116 conflicting-interpretations-of-pathogenicity, Congenital disorder of glycosylation type 1E 50,942,070(+) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ADNP-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1072547 CNV deletion 25765185
nsv1143987 CNV deletion 24896259
nsv834002 CNV loss 17160897
nsv954057 CNV deletion 24416366

Additional Variant Information for ADNP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADNP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADNP-AS1 Gene

Disorders for ADNP-AS1 Gene

Additional Disease Information for ADNP-AS1

No disorders were found for ADNP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADNP-AS1 Gene

Publications for ADNP-AS1 Gene

No publications were found for ADNP-AS1 Gene.

Products for ADNP-AS1 Gene

Sources for ADNP-AS1 Gene

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