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Aliases for ADIPOQ-AS1 Gene

Subcategory (RNA class) for ADIPOQ-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ADIPOQ-AS1 Gene

  • ADIPOQ Antisense RNA 1 2 3 5
  • ADIPOQ Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for ADIPOQ-AS1 Gene

Previous GeneCards Identifiers for ADIPOQ-AS1 Gene

  • GC00U933941
  • GC03M186570

Summaries for ADIPOQ-AS1 Gene

GeneCards Summary for ADIPOQ-AS1 Gene

ADIPOQ-AS1 (ADIPOQ Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ADIPOQ-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADIPOQ-AS1 Gene

Genomics for ADIPOQ-AS1 Gene

GeneHancer (GH) Regulatory Elements for ADIPOQ-AS1 Gene

Promoters and enhancers for ADIPOQ-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J187019 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.8 -168.6 -168585 11 HDGF PKNOX1 FOXA2 SMAD1 ARNT YBX1 ZNF766 CBX5 E2F8 ZNF143 ST6GAL1 ADIPOQ ADIPOQ-AS1 RTP4 EIF4A2 TBCCD1 RTP1 GC03P186996 GC03P186997 PIR46786
GH03J186995 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -143.4 -143435 7.8 HDGF PKNOX1 ATF1 SMAD1 SIN3A IRF4 TCF12 ZNF766 GATA2 ZNF207 ADIPOQ-AS1 ADIPOQ ST6GAL1 RTP1 GC03P186996 GC03P186997 PIR46786
GH03J186824 Promoter/Enhancer 1.5 Ensembl ENCODE 10.5 +29.6 29602 3.3 ATF1 ARID4B SIN3A BRCA1 ZNF48 TCF12 POLR2B GLIS2 ZNF143 ZNF207 ENSG00000231982 LINC02043 SNORA63B RFC4 TRA2B TBCCD1 SNORA63 SNORA81 EIF4A2 ADIPOQ-AS1
GH03J186947 Enhancer 1.3 VISTA ENCODE dbSUPER 11.1 -92.8 -92782 3.6 HNRNPUL1 PKNOX1 ATF1 TCF12 ZNF766 GATA2 ATF7 RUNX3 NCOA1 ZNF592 TBCCD1 ADIPOQ-AS1 ADIPOQ SNORA63B RPS20P14 LOC100131635 ST6GAL1 GC03P186932 GC03P186996 GC03P186997
GH03J187038 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.3 -185.5 -185543 7.3 FOXA2 MLX ARID4B DMAP1 YY1 SLC30A9 ZNF143 PAF1 SP5 JUNB ADIPOQ RFC4 EIF4A2 SNORA63B SNORA63 SNORA81 ADIPOQ-AS1 ST6GAL1 PIR46786 GC03P186996
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ADIPOQ-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADIPOQ-AS1 Gene

Genomic Locations for ADIPOQ-AS1 Gene
chr3:186,851,886-186,856,123
(GRCh38/hg38)
Size:
4,238 bases
Orientation:
Minus strand
chr3:186,569,675-186,573,912
(GRCh37/hg19)

Genomic View for ADIPOQ-AS1 Gene

Genes around ADIPOQ-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADIPOQ-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADIPOQ-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADIPOQ-AS1 Gene

Proteins for ADIPOQ-AS1 Gene

Post-translational modifications for ADIPOQ-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADIPOQ-AS1 Gene

Domains & Families for ADIPOQ-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ADIPOQ-AS1 Gene

Function for ADIPOQ-AS1 Gene

Phenotypes From GWAS Catalog for ADIPOQ-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADIPOQ-AS1 Gene

Localization for ADIPOQ-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADIPOQ-AS1 Gene

Pathways & Interactions for ADIPOQ-AS1 Gene

SuperPathways for ADIPOQ-AS1 Gene

No Data Available

Interacting Proteins for ADIPOQ-AS1 Gene

Gene Ontology (GO) - Biological Process for ADIPOQ-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADIPOQ-AS1 Gene

Drugs & Compounds for ADIPOQ-AS1 Gene

No Compound Related Data Available

Transcripts for ADIPOQ-AS1 Gene

mRNA/cDNA for ADIPOQ-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for ADIPOQ-AS1 Gene

ADIPOQ antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ADIPOQ-AS1 Gene

No ASD Table

Relevant External Links for ADIPOQ-AS1 Gene

GeneLoc Exon Structure for
ADIPOQ-AS1
ECgene alternative splicing isoforms for
ADIPOQ-AS1

Expression for ADIPOQ-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADIPOQ-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ADIPOQ-AS1 Gene

This gene is overexpressed in Adipose - Visceral (Omentum) (x20.2), Adipose - Subcutaneous (x18.6), and Breast - Mammary Tissue (x8.1).

SOURCE GeneReport for Unigene cluster for ADIPOQ-AS1 Gene:

Hs.638968
genes like me logo Genes that share expression patterns with ADIPOQ-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADIPOQ-AS1 Gene

Orthologs for ADIPOQ-AS1 Gene

Evolution for ADIPOQ-AS1 Gene

ENSEMBL:
Gene Tree for ADIPOQ-AS1 (if available)
TreeFam:
Gene Tree for ADIPOQ-AS1 (if available)

No data available for Orthologs for ADIPOQ-AS1 Gene

Paralogs for ADIPOQ-AS1 Gene

No data available for Paralogs for ADIPOQ-AS1 Gene

Variants for ADIPOQ-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADIPOQ-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs121917815 pathogenic, Hypoadiponectinemia 186,854,303(-) C/T non_coding_transcript_variant
rs147185738 uncertain-significance, not specified 186,853,249(-) A/G intron_variant
rs1000844554 -- 186,854,422(-) C/T non_coding_transcript_variant
rs1001164255 -- 186,854,386(-) G/A non_coding_transcript_variant
rs1001682500 -- 186,852,709(-) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ADIPOQ-AS1 Gene

Variant ID Type Subtype PubMed ID
esv34136 CNV loss 18971310
esv3598999 CNV gain 21293372
esv3893839 CNV gain 25118596
nsv1001111 CNV gain 25217958
nsv1010626 CNV loss 25217958
nsv1012615 CNV gain 25217958
nsv4155 CNV deletion 18451855
nsv508263 CNV deletion 20534489

Additional Variant Information for ADIPOQ-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADIPOQ-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADIPOQ-AS1 Gene

Disorders for ADIPOQ-AS1 Gene

Additional Disease Information for ADIPOQ-AS1

No disorders were found for ADIPOQ-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADIPOQ-AS1 Gene

Publications for ADIPOQ-AS1 Gene

  1. Clear detection of ADIPOQ locus as the major gene for plasma adiponectin: results of genome-wide association analyses including 4659 European individuals. (PMID: 20018283) Heid IM … van Duijn CM (Atherosclerosis 2010) 3 58
  2. Genome-wide linkage and association analyses to identify genes influencing adiponectin levels: the GEMS Study. (PMID: 19165155) Ling H … Mitchell BD (Obesity (Silver Spring, Md.) 2009) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ADIPOQ-AS1 Gene

Sources for ADIPOQ-AS1 Gene

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