Aliases for ADGRF5-AS1 Gene

Subcategory (RNA class) for ADGRF5-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ADGRF5-AS1 Gene

  • ADGRF5 Antisense RNA 1 2 3 5
  • ADGRF5-AS1 2 5
  • NONHSAG043884.2 91
  • HSALNG0050386 164
  • Lnc-MEP1A-2 165

External Ids for ADGRF5-AS1 Gene

Previous GeneCards Identifiers for ADGRF5-AS1 Gene

  • GC06P046904
  • GC06P047141

Summaries for ADGRF5-AS1 Gene

GeneCards Summary for ADGRF5-AS1 Gene

ADGRF5-AS1 (ADGRF5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ADGRF5-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADGRF5-AS1 Gene

Genomics for ADGRF5-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ADGRF5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J046899 Enhancer 0.5 Ensembl dbSUPER 600.7 +0.7 715 1.2 CREB1 TEAD4 ADGRF5-AS1 ADGRF5 LOC105375080 MEP1A
GH06J046897 Enhancer 0.4 Ensembl dbSUPER 600.7 -0.5 -485 0.4 PRDM1 ADGRF5-AS1 ADGRF5 lnc-ADGRF1-1 MEP1A
GH06J046917 Promoter/Enhancer 1 EPDnew Ensembl dbSUPER 11.9 +21.7 21715 5.2 POLR2A TBP ADGRF5 LOC105375080 ADGRF5-AS1 SLC25A27 MEP1A
GH06J046935 Enhancer 0.9 Ensembl ENCODE dbSUPER 11.4 +37.0 36954 2.5 TEAD4 KDM1A ESR1 CEBPB FOXA2 POLR2A MAX NR2F2 RXRA JUN ADGRF5-AS1 LOC105375080 ADGRF5 MEP1A
GH06J046989 Enhancer 0.9 Ensembl ENCODE 10.8 +91.4 91415 2.6 CTCF FOXA1 REST RAD21 ZNF600 YY1 SMC3 ZNF217 WT1 GATA3 ADGRF5 ADGRF5-AS1 PLA2G7 MEP1A lnc-ADGRF5-1 HSALNG0050389 ADGRF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADGRF5-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ADGRF5-AS1 Gene

Genomic Locations for ADGRF5-AS1 Gene
chr6:46,898,886-46,910,041
(GRCh38/hg38)
Size:
11,156 bases
Orientation:
Plus strand
chr6:46,871,208-46,876,815
(GRCh37/hg19)
Size:
5,608 bases
Orientation:
Plus strand

Genomic View for ADGRF5-AS1 Gene

Genes around ADGRF5-AS1 on UCSC Golden Path with GeneCards custom track
ADGRF5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ADGRF5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADGRF5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADGRF5-AS1 Gene

Proteins for ADGRF5-AS1 Gene

Post-translational modifications for ADGRF5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADGRF5-AS1 Gene

Domains & Families for ADGRF5-AS1 Gene

Gene Families for ADGRF5-AS1 Gene

genes like me logo Genes that share domains with ADGRF5-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADGRF5-AS1 Gene

Function for ADGRF5-AS1 Gene

Phenotypes From GWAS Catalog for ADGRF5-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADGRF5-AS1 Gene

Localization for ADGRF5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADGRF5-AS1 Gene

Pathways & Interactions for ADGRF5-AS1 Gene

PathCards logo

SuperPathways for ADGRF5-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADGRF5-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ADGRF5-AS1 Gene

Drugs & Compounds for ADGRF5-AS1 Gene

No Compound Related Data Available

Transcripts for ADGRF5-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ADGRF5-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DAF1_9606 lncRNA 1732 3

HGNC: 40864,

RefSeq: NR_110658,

LNCipedia: lnc-MEP1A-2:4,

URS000004F8D2_9606 lncRNA 781 2

Ensembl: ENST00000451135 (view in UCSC) ,

LNCipedia: lnc-MEP1A-2:1,

URS00008B8787_9606 lncRNA 1744 3

LncBook: HSALNT0106784,

LNCipedia: lnc-MEP1A-2:2,

NONCODE: NONHSAT113024.2,

URS00009B7FA1_9606 lncRNA 893 2

LncBook: HSALNT0106783,

NONCODE: NONHSAT207341.1,

URS0000D5DC21_9606 lncRNA 1730 1

LNCipedia: lnc-MEP1A-2:3,

ADGRF5-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ADGRF5-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ADGRF5-AS1 Gene

No ASD Table

Relevant External Links for ADGRF5-AS1 Gene

GeneLoc Exon Structure for
ADGRF5-AS1

Expression for ADGRF5-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ADGRF5-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADGRF5-AS1 Gene

Orthologs for ADGRF5-AS1 Gene

Evolution for ADGRF5-AS1 Gene

ENSEMBL:
Gene Tree for ADGRF5-AS1 (if available)
TreeFam:
Gene Tree for ADGRF5-AS1 (if available)

No data available for Orthologs for ADGRF5-AS1 Gene

Paralogs for ADGRF5-AS1 Gene

No data available for Paralogs for ADGRF5-AS1 Gene

Variants for ADGRF5-AS1 Gene

Additional dbSNP identifiers (rs#s) for ADGRF5-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ADGRF5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759425 CNV gain+loss 17122850
nsv1017113 CNV gain 25217958
nsv428147 CNV gain 18775914
nsv830654 CNV gain 17160897

Additional Variant Information for ADGRF5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADGRF5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ADGRF5-AS1 Gene

Disorders for ADGRF5-AS1 Gene

No disorders were found for ADGRF5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ADGRF5-AS1 Gene

Publications for ADGRF5-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for ADGRF5-AS1 Gene

Products for ADGRF5-AS1 Gene

Sources for ADGRF5-AS1 Gene