Aliases for ADGRD1-AS1 Gene

Subcategory (RNA class) for ADGRD1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ADGRD1-AS1 Gene

  • ADGRD1 Antisense RNA 1 2 3 5
  • ADGRD1-AS1 2 5 165
  • Lung Adenocarcinoma-Associated Transcript 8 2 3
  • LACAT8 2 3
  • NONHSAG012763.2 91
  • HSALNG0095161 164

External Ids for ADGRD1-AS1 Gene

Summaries for ADGRD1-AS1 Gene

GeneCards Summary for ADGRD1-AS1 Gene

ADGRD1-AS1 (ADGRD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ADGRD1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADGRD1-AS1 Gene

Genomics for ADGRD1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ADGRD1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J130995 Promoter 0.7 EPDnew 600.7 0.0 -26 0.1 PKNOX1 SP1 USF1 MBD2 FOS RAD51 USF2 NFYC ELF1 ADGRD1-AS1 piR-34488 ADGRD1 piR-54592-078 LOC100996701
GH12J130992 Enhancer 0.6 Ensembl ENCODE 607.9 +1.5 1524 0.5 ZIC2 RFX1 TCF12 EBF1 ADGRD1-AS1 piR-34488 ADGRD1 ENSG00000280002 LOC100996701
GH12J130994 Enhancer 0.4 ENCODE 606.8 -1.3 -1293 0.9 SOX13 SMAD4 RAD21 ADGRD1-AS1 piR-34488 ADGRD1 ENSG00000256204 piR-54592-078 LOC100996701
GH12J130993 Enhancer 0.4 Ensembl 600.7 +0.9 876 0.2 ZNF24 MNT ZFP91 ADGRD1-AS1 piR-34488 ADGRD1 ENSG00000280002 LOC100996701
GH12J130978 Promoter/Enhancer 1.3 Ensembl ENCODE 6.9 +11.8 11839 6.4 SP1 GATAD2A ATF7 ZNF512 KDM1A RCOR2 ZIC2 RXRB TCF12 IRF2 ENSG00000279581 ADGRD1 ADGRD1-AS1 ENSG00000256204 lnc-RAN-5 ENSG00000280002 LOC100996701
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADGRD1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ADGRD1-AS1 Gene

Genomic Locations for ADGRD1-AS1 Gene
chr12:130,990,138-130,993,977
(GRCh38/hg38)
Size:
3,840 bases
Orientation:
Minus strand
chr12:131,474,683-131,478,521
(GRCh37/hg19)
Size:
3,839 bases
Orientation:
Minus strand

Genomic View for ADGRD1-AS1 Gene

Genes around ADGRD1-AS1 on UCSC Golden Path with GeneCards custom track
ADGRD1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ADGRD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADGRD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADGRD1-AS1 Gene

Proteins for ADGRD1-AS1 Gene

Post-translational modifications for ADGRD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADGRD1-AS1 Gene

Domains & Families for ADGRD1-AS1 Gene

Gene Families for ADGRD1-AS1 Gene

genes like me logo Genes that share domains with ADGRD1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADGRD1-AS1 Gene

Function for ADGRD1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADGRD1-AS1 Gene

Localization for ADGRD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADGRD1-AS1 Gene

Pathways & Interactions for ADGRD1-AS1 Gene

PathCards logo

SuperPathways for ADGRD1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADGRD1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ADGRD1-AS1 Gene

Drugs & Compounds for ADGRD1-AS1 Gene

No Compound Related Data Available

Transcripts for ADGRD1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ADGRD1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001DED7E_9606 lncRNA 1037 4

Ensembl: ENST00000536673 (view in UCSC) ,

LncBook: HSALNT0197519,

LNCipedia: ADGRD1-AS1:7,

NONCODE: NONHSAT031997.2,

URS00005F1AAA_9606 lncRNA 1277 3

Ensembl: ENST00000542980 (view in UCSC) ,

LNCipedia: ADGRD1-AS1:6,

NONCODE: NONHSAT031996.2,

URS00008E3A2B_9606 lncRNA 789 3

HGNC: 53314,

RefSeq: NR_131950,

LNCipedia: ADGRD1-AS1:3,

URS00008E39B2_9606 lncRNA 581 2

RefSeq: NR_131951,

LNCipedia: ADGRD1-AS1:4,

URS00009BA655_9606 lncRNA 1277 2

LncBook: HSALNT0197518,

NONCODE: NONHSAT164259.1,

ADGRD1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ADGRD1-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ADGRD1-AS1 Gene

No ASD Table

Relevant External Links for ADGRD1-AS1 Gene

GeneLoc Exon Structure for
ADGRD1-AS1

Expression for ADGRD1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADGRD1-AS1 Gene

Orthologs for ADGRD1-AS1 Gene

Evolution for ADGRD1-AS1 Gene

ENSEMBL:
Gene Tree for ADGRD1-AS1 (if available)
TreeFam:
Gene Tree for ADGRD1-AS1 (if available)

No data available for Orthologs for ADGRD1-AS1 Gene

Paralogs for ADGRD1-AS1 Gene

No data available for Paralogs for ADGRD1-AS1 Gene

Variants for ADGRD1-AS1 Gene

Additional dbSNP identifiers (rs#s) for ADGRD1-AS1 Gene

Additional Variant Information for ADGRD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADGRD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ADGRD1-AS1 Gene

Disorders for ADGRD1-AS1 Gene

No disorders were found for ADGRD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADGRD1-AS1 Gene

Publications for ADGRD1-AS1 Gene

  1. The landscape of long noncoding RNAs in the human transcriptome. (PMID: 25599403) Iyer MK … Chinnaiyan AM (Nature genetics 2015) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for ADGRD1-AS1 Gene

Products for ADGRD1-AS1 Gene

Sources for ADGRD1-AS1 Gene