ADGRD1-AS1 Gene (RNA Gene)

ADGRD1 Antisense RNA 1

GC12M130991
GIFtS:
9

Aliases for ADGRD1-AS1 Gene

Subcategory (RNA class) for ADGRD1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for ADGRD1-AS1 Gene

  • ADGRD1 Antisense RNA 1 2 3 5
  • Lung Adenocarcinoma-Associated Transcript 8 2 3
  • ADGRD1-AS1 2 170
  • NONHSAG012763 94
  • HSALNG0095161 169
  • LACAT8 3

External Ids for ADGRD1-AS1 Gene

Summaries for ADGRD1-AS1 Gene

GeneCards Summary for ADGRD1-AS1 Gene

ADGRD1-AS1 (ADGRD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ADGRD1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADGRD1-AS1 Gene

Genomics for ADGRD1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ADGRD1-AS1 Gene

Promoters and enhancers for ADGRD1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J130992 Enhancer 0.6 Ensembl ENCODE 757.9 +1.5 1524 0.5 ZIC2 RFX1 EBF1 ADGRD1-AS1 piR-34488 ADGRD1 ENSG00000280002
GH12J130993 Enhancer 0.4 Ensembl 750.6 +0.9 876 0.2 ZNF24 MNT ZFP91 ADGRD1-AS1 piR-34488 ADGRD1 ENSG00000280002
GH12J130994 Enhancer 0.3 ENCODE 756.8 -1.3 -1293 0.9 SOX13 SMAD4 ADGRD1-AS1 piR-34488 ADGRD1 ENSG00000256204 piR-54592-078
GH12J130978 Promoter/Enhancer 1.3 Ensembl ENCODE 6.8 +11.8 11839 6.4 ZNF24 SP1 MLX RBPJ CTBP1 NR2F1 NR2F6 ATF1 MIXL1 HLF ENSG00000279581 ADGRD1 ADGRD1-AS1 ENSG00000256204 lnc-RAN-5 ENSG00000280002
GH12J131027 Promoter/Enhancer 1.1 FANTOM5 Ensembl ENCODE 6.5 -34.8 -34763 1.6 SP1 FOXA2 CUX1 FOSL2 ZNF687 FOXA1 HNF4A FOS ENSG00000279993 lnc-STX2-9 ADGRD1 ADGRD1-AS1 ENSG00000256810
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADGRD1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADGRD1-AS1 Gene

Genomic Locations for ADGRD1-AS1 Gene
chr12:130,990,138-130,993,977
(GRCh38/hg38)
Size:
3,840 bases
Orientation:
Minus strand
chr12:131,474,683-131,478,521
(GRCh37/hg19)
Size:
3,839 bases
Orientation:
Minus strand

Genomic View for ADGRD1-AS1 Gene

Genes around ADGRD1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADGRD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADGRD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for ADGRD1-AS1 Gene

Proteins for ADGRD1-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ADGRD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADGRD1-AS1 Gene

Domains & Families for ADGRD1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADGRD1-AS1 Gene

Function for ADGRD1-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADGRD1-AS1 Gene

Localization for ADGRD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADGRD1-AS1 Gene

Pathways & Interactions for ADGRD1-AS1 Gene

PathCards logo

SuperPathways for ADGRD1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADGRD1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADGRD1-AS1 Gene

Drugs & Compounds for ADGRD1-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ADGRD1-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ADGRD1-AS1 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(3) NONCODE transcripts :
(3) LncBook transcripts :
(4) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ADGRD1-AS1 Gene

No ASD Table

Relevant External Links for ADGRD1-AS1 Gene

GeneLoc Exon Structure for
ADGRD1-AS1
ECgene alternative splicing isoforms for
ADGRD1-AS1

Expression for ADGRD1-AS1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADGRD1-AS1 Gene

Orthologs for ADGRD1-AS1 Gene

Evolution for ADGRD1-AS1 Gene

ENSEMBL:
Gene Tree for ADGRD1-AS1 (if available)
TreeFam:
Gene Tree for ADGRD1-AS1 (if available)

No data available for Orthologs for ADGRD1-AS1 Gene

Paralogs for ADGRD1-AS1 Gene

No data available for Paralogs for ADGRD1-AS1 Gene

Variants for ADGRD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADGRD1-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000039402 -- 130,990,328(-) A/C downstream_transcript_variant
rs1000178746 -- 130,995,833(-) A/G upstream_transcript_variant
rs1000280665 -- 130,995,491(-) A/T upstream_transcript_variant
rs1001085673 -- 130,991,418(-) T/C intron_variant
rs1001116340 -- 130,993,041(-) T/A intron_variant

Additional Variant Information for ADGRD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADGRD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ADGRD1-AS1 Gene

Disorders for ADGRD1-AS1 Gene

Additional Disease Information for ADGRD1-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for ADGRD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADGRD1-AS1 Gene

Publications for ADGRD1-AS1 Gene

  1. The landscape of long noncoding RNAs in the human transcriptome. (PMID: 25599403) Iyer MK … Chinnaiyan AM (Nature genetics 2015) 2 3 56
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

No data available for External Links for ADGRD1-AS1 Gene

Products for ADGRD1-AS1 Gene

Sources for ADGRD1-AS1 Gene