Aliases for ADGRA1-AS1 Gene

Subcategory (RNA class) for ADGRA1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for ADGRA1-AS1 Gene

  • Adhesion G Protein-Coupled Receptor A1 Antisense RNA 1 2 3 5
  • GPR123 Antisense RNA 1 2 3
  • ADGRA1-AS1 2 170
  • HSALNG0081859 169
  • NONHSAG007240 94
  • GPR123-AS1 3

External Ids for ADGRA1-AS1 Gene

Previous HGNC Symbols for ADGRA1-AS1 Gene

  • GPR123-AS1

Summaries for ADGRA1-AS1 Gene

GeneCards Summary for ADGRA1-AS1 Gene

ADGRA1-AS1 (Adhesion G Protein-Coupled Receptor A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ADGRA1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADGRA1-AS1 Gene

Genomics for ADGRA1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ADGRA1-AS1 Gene

Promoters and enhancers for ADGRA1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J133087 Promoter/Enhancer 1 Ensembl ENCODE 750.6 +0.1 90 1.6 NR2F1 NR2F6 GLIS2 RXRB PATZ1 POLR2A ZNF561 ZBTB20 EZH2 SCRT2 ADGRA1-AS1 ADGRA1
GH10J133088 Enhancer 0.3 Ensembl 750.6 +1.2 1190 0.2 PATZ1 SCRT2 ADGRA1-AS1 ADGRA1
GH10J133083 Enhancer 0.5 ENCODE CraniofacialAtlas 0.4 +5.4 5394 1.2 MNT RFX1 ADGRA1-AS1 ADGRA1
GH10J133071 Enhancer 0.4 CraniofacialAtlas 0.4 +16.7 16694 0.6 ZNF366 ZNF335 ZNF169 ADGRA1 ADGRA1-AS1
GH10J133072 Enhancer 0.2 Ensembl 0.4 +16.2 16190 0.2 ADGRA1 ADGRA1-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADGRA1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADGRA1-AS1 Gene

Genomic Locations for ADGRA1-AS1 Gene
chr10:133,083,073-133,088,491
(GRCh38/hg38)
Size:
5,419 bases
Orientation:
Minus strand
chr10:134,898,748-134,900,201
(GRCh37/hg19)
Size:
1,454 bases
Orientation:
Minus strand

Genomic View for ADGRA1-AS1 Gene

Genes around ADGRA1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADGRA1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADGRA1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADGRA1-AS1 Gene

Proteins for ADGRA1-AS1 Gene

Post-translational modifications for ADGRA1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADGRA1-AS1 Gene

Domains & Families for ADGRA1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADGRA1-AS1 Gene

Function for ADGRA1-AS1 Gene

Phenotypes From GWAS Catalog for ADGRA1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADGRA1-AS1 Gene

Localization for ADGRA1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADGRA1-AS1 Gene

Pathways & Interactions for ADGRA1-AS1 Gene

PathCards logo

SuperPathways for ADGRA1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADGRA1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADGRA1-AS1 Gene

Drugs & Compounds for ADGRA1-AS1 Gene

No Compound Related Data Available

Transcripts for ADGRA1-AS1 Gene

mRNA/cDNA for ADGRA1-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(9) RNACentral transcripts :
(8) LNCipedia transcripts :
(6) LncBook transcripts :
(6) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ADGRA1-AS1 Gene

No ASD Table

Relevant External Links for ADGRA1-AS1 Gene

GeneLoc Exon Structure for
ADGRA1-AS1
ECgene alternative splicing isoforms for
ADGRA1-AS1

Expression for ADGRA1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADGRA1-AS1 Gene

genes like me logo Genes that share expression patterns with ADGRA1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADGRA1-AS1 Gene

Orthologs for ADGRA1-AS1 Gene

Evolution for ADGRA1-AS1 Gene

ENSEMBL:
Gene Tree for ADGRA1-AS1 (if available)
TreeFam:
Gene Tree for ADGRA1-AS1 (if available)

No data available for Orthologs for ADGRA1-AS1 Gene

Paralogs for ADGRA1-AS1 Gene

No data available for Paralogs for ADGRA1-AS1 Gene

Variants for ADGRA1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADGRA1-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000579786 -- 133,087,796(-) C/T upstream_transcript_variant
rs1001667413 -- 133,085,123(-) A/C/G downstream_transcript_variant
rs1001701506 -- 133,087,415(-) G/A/C upstream_transcript_variant
rs1001755613 -- 133,087,732(-) T/C upstream_transcript_variant
rs1002639617 -- 133,088,343(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ADGRA1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1464n54 CNV gain 21841781
dgv998n100 CNV gain 25217958
esv2759793 CNV gain+loss 17122850
esv3625015 CNV gain 21293372
esv3625022 CNV gain 21293372
nsv1054934 CNV gain 25217958
nsv467498 CNV gain 19166990
nsv470979 CNV loss 18288195
nsv528260 CNV loss 19592680
nsv552526 CNV gain 21841781
nsv552539 CNV loss 21841781
nsv552540 CNV loss 21841781
nsv952703 CNV deletion 24416366

Additional Variant Information for ADGRA1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADGRA1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADGRA1-AS1 Gene

Disorders for ADGRA1-AS1 Gene

Additional Disease Information for ADGRA1-AS1

No disorders were found for ADGRA1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADGRA1-AS1 Gene

Publications for ADGRA1-AS1 Gene

No publications were found for ADGRA1-AS1 Gene.

Products for ADGRA1-AS1 Gene

Sources for ADGRA1-AS1 Gene