Aliases for ADD3-AS1 Gene

Subcategory (RNA class) for ADD3-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ADD3-AS1 Gene

  • ADD3 Antisense RNA 1 2 3 5
  • ADD3-AS1 2 5 165
  • NONHSAG006844.2 91
  • HSALNG0080557 164

External Ids for ADD3-AS1 Gene

Previous GeneCards Identifiers for ADD3-AS1 Gene

  • GC10M111702

Summaries for ADD3-AS1 Gene

GeneCards Summary for ADD3-AS1 Gene

ADD3-AS1 (ADD3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ADD3-AS1 include Biliary Atresia.

Additional gene information for ADD3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADD3-AS1 Gene

Genomics for ADD3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ADD3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADD3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ADD3-AS1 Gene

Genomic Locations for ADD3-AS1 Gene
chr10:109,940,104-110,008,381
(GRCh38/hg38)
Size:
68,278 bases
Orientation:
Minus strand
chr10:111,701,029-111,768,139
(GRCh37/hg19)
Size:
67,111 bases
Orientation:
Minus strand

Genomic View for ADD3-AS1 Gene

Genes around ADD3-AS1 on UCSC Golden Path with GeneCards custom track
ADD3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ADD3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADD3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADD3-AS1 Gene

Proteins for ADD3-AS1 Gene

Post-translational modifications for ADD3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADD3-AS1 Gene

Domains & Families for ADD3-AS1 Gene

Gene Families for ADD3-AS1 Gene

genes like me logo Genes that share domains with ADD3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADD3-AS1 Gene

Function for ADD3-AS1 Gene

Phenotypes From GWAS Catalog for ADD3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADD3-AS1 Gene

Localization for ADD3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADD3-AS1 Gene

Pathways & Interactions for ADD3-AS1 Gene

PathCards logo

SuperPathways for ADD3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADD3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ADD3-AS1 Gene

Drugs & Compounds for ADD3-AS1 Gene

No Compound Related Data Available

Transcripts for ADD3-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ADD3-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000759A44_9606 lncRNA 1280 5

HGNC: 48682,

RefSeq: NR_038943,

LncBook: HSALNT0168003,

LNCipedia: ADD3-AS1:8,

NONCODE: NONHSAT016327.2,

URS00009B08F8_9606 lncRNA 1882 4

Ensembl: ENST00000369657 (view in UCSC) ,

LncBook: HSALNT0168002,

LNCipedia: ADD3-AS1:13,

NONCODE: NONHSAT157481.1,

URS00009B72C6_9606 lncRNA 1147 4

Ensembl: ENST00000369655 (view in UCSC) ,

LncBook: HSALNT0168004,

LNCipedia: ADD3-AS1:11,

NONCODE: NONHSAT157482.1,

URS0000EF0165_9606 lncRNA 1407 1

Ensembl: ENST00000627565 (view in UCSC) ,

URS0000EED352_9606 lncRNA 1250 1

Ensembl: ENST00000625954 (view in UCSC) ,

ADD3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ADD3-AS1 Gene

6 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ADD3-AS1 Gene

No ASD Table

Relevant External Links for ADD3-AS1 Gene

GeneLoc Exon Structure for
ADD3-AS1

Expression for ADD3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ADD3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ADD3-AS1 Gene

This gene is overexpressed in Testis (x18.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ADD3-AS1

genes like me logo Genes that share expression patterns with ADD3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADD3-AS1 Gene

Orthologs for ADD3-AS1 Gene

Evolution for ADD3-AS1 Gene

ENSEMBL:
Gene Tree for ADD3-AS1 (if available)
TreeFam:
Gene Tree for ADD3-AS1 (if available)

No data available for Orthologs for ADD3-AS1 Gene

Paralogs for ADD3-AS1 Gene

No data available for Paralogs for ADD3-AS1 Gene

Variants for ADD3-AS1 Gene

Additional dbSNP identifiers (rs#s) for ADD3-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ADD3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3448340 CNV insertion 20981092
esv3546843 CNV deletion 23714750
nsv1052255 CNV gain 25217958
nsv1122556 CNV deletion 24896259
nsv7211 OTHER inversion 18451855
nsv7547 CNV deletion 18451855
nsv951845 CNV duplication 24416366

Additional Variant Information for ADD3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADD3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ADD3-AS1 Gene

Disorders for ADD3-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ADD3-AS1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
biliary atresia
  • atresia of bile duct
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ADD3-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ADD3-AS1 Gene

Publications for ADD3-AS1 Gene

  1. Genome-wide association study identifies a susceptibility locus for biliary atresia on 10q24.2. (PMID: 20460270) Garcia-Barceló MM … Tam PK (Human molecular genetics 2010) 3
  2. Mapping and characterization of novel (CAG)n repeat cDNAs from adult human brain derived by the oligo capture method. (PMID: 9417904) Reddy PH … Tagle DA (Genomics 1997) 3

Products for ADD3-AS1 Gene

Sources for ADD3-AS1 Gene