Aliases for ADD3-AS1 Gene

Subcategory (RNA class) for ADD3-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for ADD3-AS1 Gene

  • ADD3 Antisense RNA 1 2 3 5
  • ADD3-AS1 2 170
  • NONHSAG006844 94
  • HSALNG0080557 169

External Ids for ADD3-AS1 Gene

Previous GeneCards Identifiers for ADD3-AS1 Gene

  • GC10M111702

Summaries for ADD3-AS1 Gene

GeneCards Summary for ADD3-AS1 Gene

ADD3-AS1 (ADD3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ADD3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADD3-AS1 Gene

Genomics for ADD3-AS1 Gene

GeneHancer (GH) Regulatory Elements for ADD3-AS1 Gene

Promoters and enhancers for ADD3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADD3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADD3-AS1 Gene

Genomic Locations for ADD3-AS1 Gene
chr10:109,940,104-110,008,381
(GRCh38/hg38)
Size:
68,278 bases
Orientation:
Minus strand
chr10:111,701,029-111,768,139
(GRCh37/hg19)
Size:
67,111 bases
Orientation:
Minus strand

Genomic View for ADD3-AS1 Gene

Genes around ADD3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADD3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADD3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADD3-AS1 Gene

Proteins for ADD3-AS1 Gene

Post-translational modifications for ADD3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADD3-AS1 Gene

Domains & Families for ADD3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADD3-AS1 Gene

Function for ADD3-AS1 Gene

Phenotypes From GWAS Catalog for ADD3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADD3-AS1 Gene

Localization for ADD3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADD3-AS1 Gene

Pathways & Interactions for ADD3-AS1 Gene

PathCards logo

SuperPathways for ADD3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADD3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADD3-AS1 Gene

Drugs & Compounds for ADD3-AS1 Gene

No Compound Related Data Available

Transcripts for ADD3-AS1 Gene

mRNA/cDNA for ADD3-AS1 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(6) LNCipedia transcripts :
(5) LncBook transcripts :
(5) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ADD3-AS1 Gene

No ASD Table

Relevant External Links for ADD3-AS1 Gene

GeneLoc Exon Structure for
ADD3-AS1
ECgene alternative splicing isoforms for
ADD3-AS1

Expression for ADD3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADD3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ADD3-AS1 Gene

This gene is overexpressed in Testis (x18.3).
genes like me logo Genes that share expression patterns with ADD3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADD3-AS1 Gene

Orthologs for ADD3-AS1 Gene

Evolution for ADD3-AS1 Gene

ENSEMBL:
Gene Tree for ADD3-AS1 (if available)
TreeFam:
Gene Tree for ADD3-AS1 (if available)

No data available for Orthologs for ADD3-AS1 Gene

Paralogs for ADD3-AS1 Gene

No data available for Paralogs for ADD3-AS1 Gene

Variants for ADD3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADD3-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000065676 -- 109,959,888(-) T/C intron_variant
rs1000089165 -- 109,996,711(-) G/T intron_variant
rs1000160991 -- 109,990,289(-) G/A intron_variant
rs1000234614 -- 109,979,803(-) T/C intron_variant
rs1000270948 -- 109,983,505(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ADD3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3448340 CNV insertion 20981092
esv3546843 CNV deletion 23714750
nsv1052255 CNV gain 25217958
nsv1122556 CNV deletion 24896259
nsv7211 OTHER inversion 18451855
nsv7547 CNV deletion 18451855
nsv951845 CNV duplication 24416366

Additional Variant Information for ADD3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADD3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADD3-AS1 Gene

Disorders for ADD3-AS1 Gene

Additional Disease Information for ADD3-AS1

No disorders were found for ADD3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADD3-AS1 Gene

Publications for ADD3-AS1 Gene

  1. Genome-wide association study identifies a susceptibility locus for biliary atresia on 10q24.2. (PMID: 20460270) Garcia-Barceló MM … Tam PK (Human molecular genetics 2010) 3 56
  2. Mapping and characterization of novel (CAG)n repeat cDNAs from adult human brain derived by the oligo capture method. (PMID: 9417904) Reddy PH … Tagle DA (Genomics 1997) 3 56

Products for ADD3-AS1 Gene

Sources for ADD3-AS1 Gene