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Aliases for ADD3-AS1 Gene

Subcategory (RNA class) for ADD3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ADD3-AS1 Gene

  • ADD3 Antisense RNA 1 2 3 5

External Ids for ADD3-AS1 Gene

Previous GeneCards Identifiers for ADD3-AS1 Gene

  • GC10M111702

Summaries for ADD3-AS1 Gene

GeneCards Summary for ADD3-AS1 Gene

ADD3-AS1 (ADD3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ADD3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADD3-AS1 Gene

Genomics for ADD3-AS1 Gene

GeneHancer (GH) Regulatory Elements for ADD3-AS1 Gene

Promoters and enhancers for ADD3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J110005 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 650.7 -0.3 -328 6.9 HDGF FOXA2 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 ZNF213 ZNF143 ADD3 ADD3-AS1 PIR36361 GC10M110015 GC10M110016
GH10J109921 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 11.8 +85.7 85673 3.1 ATF1 ARID4B SIN3A BRCA1 YY1 POLR2B ZNF207 ZNF143 ATF7 RUNX3 XPNPEP1 ADD3-AS1 ADD3 RNU4-5P
GH10J109980 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12.1 +26.4 26378 2.5 BCOR HDAC1 PKNOX1 TAF9B TAL1 ZMYM3 FOSL1 TCF12 ZNF316 NCOR1 ADD3 ADD3-AS1 MXI1 XPNPEP1
GH10J109933 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 12.2 +73.3 73349 2.7 ZNF146 TFAP4 USF1 MAX SIN3A ZNF384 ZNF335 CTBP1 GATA3 POLR2A ADD3 ADD3-AS1 RNU4-5P XPNPEP1
GH10J109971 Enhancer 1.3 Ensembl ENCODE dbSUPER 12 +33.0 32967 7.6 PKNOX1 FOXA2 MLX ARID4B FEZF1 DMAP1 ZNF2 ZNF48 ETS1 YY1 ADD3 ADD3-AS1 XPNPEP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ADD3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADD3-AS1 Gene

Genomic Locations for ADD3-AS1 Gene
chr10:109,940,104-110,008,381
(GRCh38/hg38)
Size:
68,278 bases
Orientation:
Minus strand
chr10:111,701,029-111,768,139
(GRCh37/hg19)

Genomic View for ADD3-AS1 Gene

Genes around ADD3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADD3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADD3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADD3-AS1 Gene

Function for ADD3-AS1 Gene

Phenotypes From GWAS Catalog for ADD3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADD3-AS1 Gene

Localization for ADD3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADD3-AS1 Gene

Pathways & Interactions for ADD3-AS1 Gene

SuperPathways for ADD3-AS1 Gene

No Data Available

Interacting Proteins for ADD3-AS1 Gene

Gene Ontology (GO) - Biological Process for ADD3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADD3-AS1 Gene

Drugs & Compounds for ADD3-AS1 Gene

No Compound Related Data Available

Transcripts for ADD3-AS1 Gene

mRNA/cDNA for ADD3-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(5) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ADD3-AS1 Gene

No ASD Table

Relevant External Links for ADD3-AS1 Gene

GeneLoc Exon Structure for
ADD3-AS1
ECgene alternative splicing isoforms for
ADD3-AS1

Expression for ADD3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADD3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ADD3-AS1 Gene

This gene is overexpressed in Testis (x18.3).
genes like me logo Genes that share expression patterns with ADD3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADD3-AS1 Gene

Orthologs for ADD3-AS1 Gene

Evolution for ADD3-AS1 Gene

ENSEMBL:
Gene Tree for ADD3-AS1 (if available)
TreeFam:
Gene Tree for ADD3-AS1 (if available)

No data available for Orthologs for ADD3-AS1 Gene

Paralogs for ADD3-AS1 Gene

No data available for Paralogs for ADD3-AS1 Gene

Variants for ADD3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADD3-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000065676 -- 109,959,888(-) T/C intron_variant
rs1000089165 -- 109,996,711(-) G/T intron_variant
rs1000160991 -- 109,990,289(-) G/A intron_variant
rs1000234614 -- 109,979,803(-) T/C intron_variant
rs1000270948 -- 109,983,505(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ADD3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3448340 CNV insertion 20981092
esv3546843 CNV deletion 23714750
nsv1052255 CNV gain 25217958
nsv1122556 CNV deletion 24896259
nsv7211 OTHER inversion 18451855
nsv7547 CNV deletion 18451855
nsv951845 CNV duplication 24416366

Additional Variant Information for ADD3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADD3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADD3-AS1 Gene

Disorders for ADD3-AS1 Gene

Additional Disease Information for ADD3-AS1

No disorders were found for ADD3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADD3-AS1 Gene

Publications for ADD3-AS1 Gene

  1. Genome-wide association study identifies a susceptibility locus for biliary atresia on 10q24.2. (PMID: 20460270) Garcia-Barceló MM … Tam PK (Human molecular genetics 2010) 3 58
  2. Mapping and characterization of novel (CAG)n repeat cDNAs from adult human brain derived by the oligo capture method. (PMID: 9417904) Reddy PH … Tagle DA (Genomics 1997) 3 58

Products for ADD3-AS1 Gene

Sources for ADD3-AS1 Gene

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