Aliases for ADCY6-DT Gene

Subcategory (RNA class) for ADCY6-DT Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for ADCY6-DT Gene

  • ADCY6 Divergent Transcript 2 3
  • Novel Transcript 5
  • NONHSAG011059 94
  • HSALNG0090878 169
  • Lnc-CACNB3-1 170
  • AC117498.2 5

External Ids for ADCY6-DT Gene

Summaries for ADCY6-DT Gene

GeneCards Summary for ADCY6-DT Gene

ADCY6-DT (ADCY6 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ADCY6-DT include Astrocytoma.

Additional gene information for ADCY6-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADCY6-DT Gene

Genomics for ADCY6-DT Gene

GeneHancer (GH) Regulatory Elements for ADCY6-DT Gene

Promoters and enhancers for ADCY6-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J048786 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -0.6 -605 4.3 RBPJ POLR2A ZNF133 ZNF121 ZNF652 ZNF148 SP1 PRDM1 PPARG HNF1A ADCY6 ADCY6-DT lnc-DDX23-2 LOC390314 DDX23 SPATS2 KMT2D CCNT1 HDAC7 KANSL2
GH12J048794 Enhancer 0.8 ENCODE 0.4 +6.2 6198 2.2 CTCF CC2D1A RAD21 ELF3 ZNF384 ELF1 ZSCAN21 PRDM1 ZNF680 KAT8 ADCY6-DT LOC390314 MG828730-015
GH12J048798 Enhancer 0.2 Ensembl 0.4 +9.8 9754 0.2 LOC390314 ADCY6-DT lnc-ADCY6-1 MG828730-015
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADCY6-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADCY6-DT Gene

Genomic Locations for ADCY6-DT Gene
chr12:48,789,147-48,790,567
(GRCh38/hg38)
Size:
1,421 bases
Orientation:
Plus strand
chr12:49,182,930-49,184,332
(GRCh37/hg19)
Size:
1,403 bases
Orientation:
Plus strand

Genomic View for ADCY6-DT Gene

Genes around ADCY6-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADCY6-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADCY6-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADCY6-DT Gene

Proteins for ADCY6-DT Gene

Post-translational modifications for ADCY6-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADCY6-DT Gene

Domains & Families for ADCY6-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADCY6-DT Gene

Function for ADCY6-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADCY6-DT Gene

Localization for ADCY6-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADCY6-DT Gene

Pathways & Interactions for ADCY6-DT Gene

PathCards logo

SuperPathways for ADCY6-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADCY6-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADCY6-DT Gene

Drugs & Compounds for ADCY6-DT Gene

No Compound Related Data Available

Transcripts for ADCY6-DT Gene

mRNA/cDNA for ADCY6-DT Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(7) RNACentral transcripts :
(5) NONCODE transcripts :
(3) LncBook transcripts :
(4) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ADCY6-DT Gene

No ASD Table

Relevant External Links for ADCY6-DT Gene

GeneLoc Exon Structure for
ADCY6-DT
ECgene alternative splicing isoforms for
ADCY6-DT

Expression for ADCY6-DT Gene

SOURCE GeneReport for Unigene cluster for ADCY6-DT Gene:

Hs.306727
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADCY6-DT Gene

Orthologs for ADCY6-DT Gene

Evolution for ADCY6-DT Gene

ENSEMBL:
Gene Tree for ADCY6-DT (if available)
TreeFam:
Gene Tree for ADCY6-DT (if available)

No data available for Orthologs for ADCY6-DT Gene

Paralogs for ADCY6-DT Gene

No data available for Paralogs for ADCY6-DT Gene

Variants for ADCY6-DT Gene

Sequence variations from dbSNP and Humsavar for ADCY6-DT Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000590465 -- 48,790,778(+) G/A downstream_transcript_variant
rs1001255961 -- 48,790,811(+) C/T downstream_transcript_variant
rs1002014062 -- 48,787,626(+) C/T upstream_transcript_variant
rs1002871180 -- 48,789,350(+) C/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1002987987 -- 48,788,712(+) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ADCY6-DT Gene

Variant ID Type Subtype PubMed ID
nsv1069662 CNV deletion 25765185
nsv826363 CNV gain 20364138

Additional Variant Information for ADCY6-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADCY6-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADCY6-DT Gene

Disorders for ADCY6-DT Gene

MalaCards: The human disease database

(1) MalaCards diseases for ADCY6-DT Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ADCY6-DT: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ADCY6-DT Gene

Publications for ADCY6-DT Gene

No publications were found for ADCY6-DT Gene.

No data available for External Links for ADCY6-DT Gene

Products for ADCY6-DT Gene

Sources for ADCY6-DT Gene