Aliases for ADARB2-AS1 Gene

Subcategory (RNA class) for ADARB2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ADARB2-AS1 Gene

  • ADARB2 Antisense RNA 1 2 3 4 5
  • ADARB2-AS1 2 5 165
  • ADARB2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NCRNA00168 3 4
  • C10orf109 3 4
  • Putative Uncharacterized Protein ADARB2-AS1 4
  • Chromosome 10 Open Reading Frame 109 2
  • ADARB2 Antisense Gene Protein 1 4
  • Non-Protein Coding RNA 168 2
  • NONHSAG004990.2 91
  • HSALNG0075559 164
  • BA466B20.1 2

External Ids for ADARB2-AS1 Gene

Previous HGNC Symbols for ADARB2-AS1 Gene

  • C10orf109
  • NCRNA00168

Previous GeneCards Identifiers for ADARB2-AS1 Gene

  • GC10P001568

Summaries for ADARB2-AS1 Gene

GeneCards Summary for ADARB2-AS1 Gene

ADARB2-AS1 (ADARB2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ADARB2-AS1 include Temporal Lobe Epilepsy and Breast Cancer.

Additional gene information for ADARB2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADARB2-AS1 Gene

Genomics for ADARB2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ADARB2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J001526 Promoter/Enhancer 0.8 EPDnew Ensembl 600.7 +0.3 270 0.6 USF1 TOE1 RAD51 USF2 ADARB2-AS1 piR-48209-036 ADARB2 IDI1
GH10J001498 Enhancer 1.1 FANTOM5 ENCODE 11.9 -27.1 -27125 1.6 ARHGAP35 CREB1 ATF7 ZNF629 LEF1 PRDM1 ZNF776 ZSCAN4 PKNOX1 PATZ1 DIP2C LARP4B ADARB2-AS1 ADARB2 WDR37 HSALNG0075557 HSALNG0075552 IDI1
GH10J000666 Enhancer 0.9 Ensembl dbSUPER 11.8 -858.8 -858828 1.6 YBX1 PHB2 ZSCAN4 MNT HES1 TARDBP TSC22D4 NONO SCRT1 ZNF8 ADARB2-AS1 ENSG00000225140 LARP4B lnc-LARP4B-3 DIP2C-AS1 DIP2C
GH10J001501 Enhancer 0.2 ENCODE 12 -24.1 -24092 1.2 ADARB2-AS1 HSALNG0075557 HSALNG0075552 ADARB2 IDI1
GH10J001502 Enhancer 0.2 Ensembl 11.9 -25.2 -25228 0.4 ADARB2-AS1 HSALNG0075557 HSALNG0075552 ADARB2 IDI1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADARB2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ADARB2-AS1 Gene

Genomic Locations for ADARB2-AS1 Gene
chr10:1,526,629-1,557,485
(GRCh38/hg38)
Size:
30,857 bases
Orientation:
Plus strand
chr10:1,568,825-1,599,179
(GRCh37/hg19)
Size:
30,355 bases
Orientation:
Plus strand

Genomic View for ADARB2-AS1 Gene

Genes around ADARB2-AS1 on UCSC Golden Path with GeneCards custom track
ADARB2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ADARB2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADARB2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADARB2-AS1 Gene

Proteins for ADARB2-AS1 Gene

  • Protein details for ADARB2-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MUL3-ADAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein ADARB2-AS1
    Protein Accession:
    A8MUL3

    Protein attributes for ADARB2-AS1 Gene

    Size:
    147 amino acids
    Molecular mass:
    15836 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ADARB2-AS1 Gene

Post-translational modifications for ADARB2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADARB2-AS1 Gene

Domains & Families for ADARB2-AS1 Gene

Gene Families for ADARB2-AS1 Gene

Protein Domains for ADARB2-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with ADARB2-AS1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADARB2-AS1 Gene

Function for ADARB2-AS1 Gene

Phenotypes From GWAS Catalog for ADARB2-AS1 Gene

Phenotypes for ADARB2-AS1 Gene

genes like me logo Genes that share phenotypes with ADARB2-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADARB2-AS1 Gene

Localization for ADARB2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADARB2-AS1 Gene

Pathways & Interactions for ADARB2-AS1 Gene

PathCards logo

SuperPathways for ADARB2-AS1 Gene

No Data Available

Interacting Proteins for ADARB2-AS1 Gene

Selected Interacting proteins: A8MUL3-ADAS1_HUMAN for ADARB2-AS1 Gene via IID

Symbol External ID(s) Details
PTPN2

Gene Ontology (GO) - Biological Process for ADARB2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADARB2-AS1 Gene

Drugs & Compounds for ADARB2-AS1 Gene

No Compound Related Data Available

Transcripts for ADARB2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ADARB2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000409DE9_9606 lncRNA 625 4

Ensembl: ENST00000381301 (view in UCSC) ,

LncBook: HSALNT0157367,

LNCipedia: ADARB2-AS1:3,

NONCODE: NONHSAT010933.2,

URS0000CCE155_9606 lncRNA 668 2

HGNC: 23299,

RefSeq: NR_033387,

URS0000138B5D_9606 lncRNA 637 2

Ensembl: ENST00000421697 (view in UCSC) ,

LNCipedia: ADARB2-AS1:2,

URS0000CCDF86_9606 lncRNA 598 1

RefSeq: NR_152792,

URS00008B2318_9606 lncRNA 1128 2

LNCipedia: ADARB2-AS1:4,

NONCODE: NONHSAT010934.2,

ADARB2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ADARB2-AS1 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ADARB2-AS1 Gene

No ASD Table

Relevant External Links for ADARB2-AS1 Gene

GeneLoc Exon Structure for
ADARB2-AS1

Expression for ADARB2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ADARB2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ADARB2-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x17.0), Brain - Substantia nigra (x12.4), and Brain - Hypothalamus (x4.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ADARB2-AS1

SOURCE GeneReport for Unigene cluster for ADARB2-AS1 Gene:

Hs.568831
genes like me logo Genes that share expression patterns with ADARB2-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADARB2-AS1 Gene

Orthologs for ADARB2-AS1 Gene

Evolution for ADARB2-AS1 Gene

ENSEMBL:
Gene Tree for ADARB2-AS1 (if available)
TreeFam:
Gene Tree for ADARB2-AS1 (if available)

No data available for Orthologs for ADARB2-AS1 Gene

Paralogs for ADARB2-AS1 Gene

No data available for Paralogs for ADARB2-AS1 Gene

Variants for ADARB2-AS1 Gene

Additional dbSNP identifiers (rs#s) for ADARB2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ADARB2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv337n106 CNV deletion 24896259
dgv78e201 CNV deletion 23290073
dgv925n54 CNV gain 21841781
esv1269144 CNV deletion 17803354
esv1416852 CNV deletion 17803354
esv1522620 CNV deletion 17803354
esv1588804 CNV deletion 17803354
esv1608725 CNV deletion 17803354
esv1761080 CNV deletion 17803354
esv23632 CNV loss 19812545
esv2730040 CNV deletion 23290073
esv2730051 CNV deletion 23290073
esv2730062 CNV deletion 23290073
esv2730073 CNV deletion 23290073
esv2730084 CNV deletion 23290073
esv2730106 CNV deletion 23290073
esv2730117 CNV deletion 23290073
esv2730128 CNV deletion 23290073
esv2730140 CNV deletion 23290073
esv2730151 CNV deletion 23290073
esv991990 CNV deletion 20482838
nsv1041498 CNV gain 25217958
nsv1046041 CNV gain 25217958
nsv1054555 CNV gain 25217958
nsv24360 CNV deletion 16902084
nsv512138 CNV loss 21212237
nsv549792 CNV loss 21841781
nsv821076 CNV deletion 20802225
nsv951234 CNV deletion 24416366

Additional Variant Information for ADARB2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADARB2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ADARB2-AS1 Gene

Disorders for ADARB2-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for ADARB2-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
temporal lobe epilepsy
  • epilepsy, temporal lobe
breast cancer
  • breast lobular carcinoma
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ADARB2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ADARB2-AS1 Gene

Publications for ADARB2-AS1 Gene

  1. Linc-ing Circulating Long Non-coding RNAs to the Diagnosis and Malignant Prediction of Intraductal Papillary Mucinous Neoplasms of the Pancreas. (PMID: 28874676) Permuth JB … Gillies R (Scientific reports 2017) 2 3
  2. Defining the Protein-Protein Interaction Network of the Human Protein Tyrosine Phosphatase Family. (PMID: 27432908) Li X … Wang W (Molecular & cellular proteomics : MCP 2016) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 4
  5. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

Products for ADARB2-AS1 Gene

Sources for ADARB2-AS1 Gene