Aliases for ADAMTSL4-AS2 Gene

Subcategory (RNA class) for ADAMTSL4-AS2 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ADAMTSL4-AS2 Gene

  • ADAMTSL4 Antisense RNA 2 2 3
  • NONHSAG002859 92
  • ADAMTSL4-AS2 2
  • Lnc-MCL1-7 168

External Ids for ADAMTSL4-AS2 Gene

Summaries for ADAMTSL4-AS2 Gene

GeneCards Summary for ADAMTSL4-AS2 Gene

ADAMTSL4-AS2 (ADAMTSL4 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ADAMTSL4-AS2 include Ectopia Lentis Et Pupillae.

Additional gene information for ADAMTSL4-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADAMTSL4-AS2 Gene

Genomics for ADAMTSL4-AS2 Gene

GeneHancer (GH) Regulatory Elements for ADAMTSL4-AS2 Gene

Promoters and enhancers for ADAMTSL4-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J150555 Enhancer 0.6 CraniofacialAtlas dbSUPER 500.7 +1.6 1613 0.4 SUPT5H POLR2A RBFOX2 ADAMTSL4-AS2 ENSG00000237781 NONHSAG002860.2-001 ADAMTSL4 MIR4257 RF00017-333
GH01J150548 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +7.6 7626 9 NRF1 GTF2E2 PHB2 TEAD4 CTCF ZIC2 POLR2A ZBTB11 AFF1 ZBTB26 ADAMTSL4 MIR4257 HORMAD1 CTSK ARNT PRPF3 SF3B4 SETDB1 PI4KB GABPB2
GH01J150557 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -11.4 -11366 23.1 RXRA HNRNPK ZBTB40 ZNF217 EP300 CTCF ZSCAN5C SIN3A NRF1 TCF12 RF00017-336 RN7SL600P lnc-MCL1-1 MCL1 PRPF3 SETDB1 PI4KB PIP5K1A ARNT GOLPH3L
GH01J150556 Enhancer 0.5 Ensembl 0.7 +2.4 2437 0.2 POLR2A SUPT5H SUZ12 HDAC2 ZNF184 KDM1A RBFOX2 MNT HDAC1 NONHSAG002860.2-001 ADAMTSL4-AS2 ENSG00000237781 MIR4257 ADAMTSL4 RF00017-333
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADAMTSL4-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADAMTSL4-AS2 Gene

Genomic Locations for ADAMTSL4-AS2 Gene
chr1:150,548,449-150,557,938
(GRCh38/hg38)
Size:
9,490 bases
Orientation:
Minus strand

Genomic View for ADAMTSL4-AS2 Gene

Genes around ADAMTSL4-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADAMTSL4-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADAMTSL4-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAMTSL4-AS2 Gene

Proteins for ADAMTSL4-AS2 Gene

Post-translational modifications for ADAMTSL4-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADAMTSL4-AS2 Gene

Domains & Families for ADAMTSL4-AS2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADAMTSL4-AS2 Gene

Function for ADAMTSL4-AS2 Gene

Phenotypes From GWAS Catalog for ADAMTSL4-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADAMTSL4-AS2 Gene

Localization for ADAMTSL4-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADAMTSL4-AS2 Gene

Pathways & Interactions for ADAMTSL4-AS2 Gene

PathCards logo

SuperPathways for ADAMTSL4-AS2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ADAMTSL4-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ADAMTSL4-AS2 Gene

Drugs & Compounds for ADAMTSL4-AS2 Gene

No Compound Related Data Available

Transcripts for ADAMTSL4-AS2 Gene

mRNA/cDNA for ADAMTSL4-AS2 Gene

5 RNACentral transcripts :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTSL4-AS2 Gene

No ASD Table

Relevant External Links for ADAMTSL4-AS2 Gene

GeneLoc Exon Structure for
ADAMTSL4-AS2

Expression for ADAMTSL4-AS2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ADAMTSL4-AS2

SOURCE GeneReport for Unigene cluster for ADAMTSL4-AS2 Gene:

Hs.677561
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADAMTSL4-AS2 Gene

Orthologs for ADAMTSL4-AS2 Gene

No data available for Orthologs and Evolution for ADAMTSL4-AS2 Gene

Paralogs for ADAMTSL4-AS2 Gene

No data available for Paralogs for ADAMTSL4-AS2 Gene

Variants for ADAMTSL4-AS2 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ADAMTSL4-AS2 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
717808 Benign: not provided 150,553,794(-) C/T MISSENSE_VARIANT
725797 Benign: not provided 150,555,502(-) G/A SYNONYMOUS_VARIANT
728991 Benign: not provided 150,553,613(-) G/A MISSENSE_VARIANT
729083 Benign: not provided 150,553,930(-) C/G SYNONYMOUS_VARIANT
754327 Benign: not provided 150,553,107(-) C/T SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for ADAMTSL4-AS2 Gene

Additional Variant Information for ADAMTSL4-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADAMTSL4-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ADAMTSL4-AS2 Gene

Disorders for ADAMTSL4-AS2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ADAMTSL4-AS2 Gene - From: GeneCards

Disorder Aliases PubMed IDs
ectopia lentis et pupillae
  • ectopia lentis with ectopia of pupil
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ADAMTSL4-AS2: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ADAMTSL4-AS2 Gene

Publications for ADAMTSL4-AS2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for ADAMTSL4-AS2 Gene

Products for ADAMTSL4-AS2 Gene

Sources for ADAMTSL4-AS2 Gene