Aliases for ADAMTSL4-AS1 Gene

Subcategory (RNA class) for ADAMTSL4-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ADAMTSL4-AS1 Gene

  • ADAMTSL4 Antisense RNA 1 2 3 4 5
  • ADAMTSL4-AS1 2 5 165
  • C1orf138 3 4
  • Uncharacterized Protein ADAMTSL4-AS1 4
  • Chromosome 1 Open Reading Frame 138 2
  • ADAMTSL4 Antisense Gene Protein 1 4
  • HSALNG0007053 164
  • FLJ45786 2

External Ids for ADAMTSL4-AS1 Gene

Previous HGNC Symbols for ADAMTSL4-AS1 Gene

  • C1orf138

Previous GeneCards Identifiers for ADAMTSL4-AS1 Gene

  • GC01M150533

Summaries for ADAMTSL4-AS1 Gene

GeneCards Summary for ADAMTSL4-AS1 Gene

ADAMTSL4-AS1 (ADAMTSL4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ADAMTSL4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADAMTSL4-AS1 Gene

Genomics for ADAMTSL4-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ADAMTSL4-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADAMTSL4-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ADAMTSL4-AS1 Gene

Genomic Locations for ADAMTSL4-AS1 Gene
chr1:150,560,202-150,574,552
(GRCh38/hg38)
Size:
14,351 bases
Orientation:
Minus strand
chr1:150,533,480-150,533,969
(GRCh37/hg19)
Size:
490 bases
Orientation:
Minus strand

Genomic View for ADAMTSL4-AS1 Gene

Genes around ADAMTSL4-AS1 on UCSC Golden Path with GeneCards custom track
ADAMTSL4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ADAMTSL4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADAMTSL4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAMTSL4-AS1 Gene

Proteins for ADAMTSL4-AS1 Gene

  • Protein details for ADAMTSL4-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T5F5-A4AS1_HUMAN
    Recommended name:
    Uncharacterized protein ADAMTSL4-AS1
    Protein Accession:
    Q5T5F5
    Secondary Accessions:
    • Q6ZS69

    Protein attributes for ADAMTSL4-AS1 Gene

    Size:
    129 amino acids
    Molecular mass:
    14090 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ADAMTSL4-AS1 Gene

Post-translational modifications for ADAMTSL4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADAMTSL4-AS1 Gene

Domains & Families for ADAMTSL4-AS1 Gene

Gene Families for ADAMTSL4-AS1 Gene

Protein Domains for ADAMTSL4-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with ADAMTSL4-AS1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADAMTSL4-AS1 Gene

Function for ADAMTSL4-AS1 Gene

Phenotypes From GWAS Catalog for ADAMTSL4-AS1 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ADAMTSL4-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADAMTSL4-AS1 Gene

Localization for ADAMTSL4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADAMTSL4-AS1 Gene

Pathways & Interactions for ADAMTSL4-AS1 Gene

PathCards logo

SuperPathways for ADAMTSL4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADAMTSL4-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ADAMTSL4-AS1 Gene

Drugs & Compounds for ADAMTSL4-AS1 Gene

No Compound Related Data Available

Transcripts for ADAMTSL4-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ADAMTSL4-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D769_9606 lncRNA 1036 5

HGNC: 32041,

RefSeq: NR_104133,

Ensembl: ENST00000617352 (view in UCSC) ,

LncBook: HSALNT0014983,

LNCipedia: ADAMTSL4-AS1:1,

URS0000D5B9EC_9606 lncRNA 490 3

Ensembl: ENST00000369035 (view in UCSC) ,

LncBook: HSALNT0014984, HSALNT0014985,

LNCipedia: ADAMTSL4-AS1:3,

URS0000D57B03_9606 lncRNA 1914 1

LNCipedia: ADAMTSL4-AS1:2,

ADAMTSL4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ADAMTSL4-AS1 Gene

1 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ADAMTSL4-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTSL4-AS1 Gene

No ASD Table

Relevant External Links for ADAMTSL4-AS1 Gene

GeneLoc Exon Structure for
ADAMTSL4-AS1

Expression for ADAMTSL4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ADAMTSL4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ADAMTSL4-AS1 Gene

This gene is overexpressed in Whole Blood (x19.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ADAMTSL4-AS1

genes like me logo Genes that share expression patterns with ADAMTSL4-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADAMTSL4-AS1 Gene

Orthologs for ADAMTSL4-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ADAMTSL4-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia ADAMTSL4-AS1 31
  • 97 (a)
OneToOne
Species where no ortholog for ADAMTSL4-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ADAMTSL4-AS1 Gene

ENSEMBL:
Gene Tree for ADAMTSL4-AS1 (if available)
TreeFam:
Gene Tree for ADAMTSL4-AS1 (if available)

Paralogs for ADAMTSL4-AS1 Gene

No data available for Paralogs for ADAMTSL4-AS1 Gene

Variants for ADAMTSL4-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ADAMTSL4-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
rs111660862 Likely Benign: Ectopia lentis 150,560,949(-) T/A NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for ADAMTSL4-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ADAMTSL4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3587506 CNV loss 21293372
nsv1006838 CNV gain 25217958
nsv527379 CNV loss 19592680

Variation tolerance for ADAMTSL4-AS1 Gene

Gene Damage Index Score: 1.41; 27.75% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ADAMTSL4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADAMTSL4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ADAMTSL4-AS1 Gene

Disorders for ADAMTSL4-AS1 Gene

No disorders were found for ADAMTSL4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADAMTSL4-AS1 Gene

Publications for ADAMTSL4-AS1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for ADAMTSL4-AS1 Gene

Sources for ADAMTSL4-AS1 Gene