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Aliases for ADAMTS9-AS2 Gene

Subcategory (RNA class) for ADAMTS9-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ADAMTS9-AS2 Gene

  • ADAMTS9 Antisense RNA 2 2 3 5
  • ADAMTS9 Antisense RNA 2 (Non-Protein Coding) 2 3

External Ids for ADAMTS9-AS2 Gene

Summaries for ADAMTS9-AS2 Gene

GeneCards Summary for ADAMTS9-AS2 Gene

ADAMTS9-AS2 (ADAMTS9 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with ADAMTS9-AS2 include Clear Cell Renal Cell Carcinoma and Lung Cancer.

Additional gene information for ADAMTS9-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADAMTS9-AS2 Gene

Genomics for ADAMTS9-AS2 Gene

GeneHancer (GH) Regulatory Elements for ADAMTS9-AS2 Gene

Promoters and enhancers for ADAMTS9-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J064684 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 650.7 +1.9 1891 5.4 PKNOX1 FOXA2 ARNT FEZF1 GLI4 YY1 ZNF121 GLIS2 KLF7 KLF13 ADAMTS9 ADAMTS9-AS2 PSMD6-AS1 PSMD6-AS2 ENSG00000272181
GH03J063910 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.1 -772.2 -772217 4 ATF1 FOXA2 ARID4B SIN3A ZNF48 ETS1 YY1 GLIS2 ZNF207 ZNF143 SCAANT1 ATXN7 PSMD6-AS2 THOC7 THOC7-AS1 LOC100130345 ADAMTS9-AS2
GH03J064500 Enhancer 0.9 ENCODE 9.9 -183.2 -183180 2.2 FOXA2 MLX FEZF1 DMAP1 FOS NFKBIZ SP5 NFYC ZHX2 MIER2 PSMD6-AS1 ADAMTS9-AS2 LOC105377123 GC03P064511
GH03J065027 Enhancer 0.8 FANTOM5 ENCODE 6.2 +342.9 342905 0.6 SP1 GTF2F1 SMAD5 POLR2A GTF2B ZNF143 ADAMTS9-AS2 GC03P064999 GC03M065064
GH03J064995 Enhancer 0.9 Ensembl ENCODE 4.6 +311.2 311201 2.1 FOXA2 FEZF1 RARA ZNF7 ZNF335 SCRT2 PRDM10 ZNF600 TCF7L2 ZBTB20 ADAMTS9-AS2 GC03P064999 LOC105377124
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADAMTS9-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADAMTS9-AS2 Gene

Genomic Locations for ADAMTS9-AS2 Gene
326,599 bases
Plus strand
326,598 bases
Plus strand

Genomic View for ADAMTS9-AS2 Gene

Genes around ADAMTS9-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADAMTS9-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADAMTS9-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAMTS9-AS2 Gene

Proteins for ADAMTS9-AS2 Gene

Post-translational modifications for ADAMTS9-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADAMTS9-AS2 Gene

Domains & Families for ADAMTS9-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ADAMTS9-AS2 Gene

Function for ADAMTS9-AS2 Gene

Phenotypes From GWAS Catalog for ADAMTS9-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADAMTS9-AS2 Gene

Localization for ADAMTS9-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADAMTS9-AS2 Gene

Pathways & Interactions for ADAMTS9-AS2 Gene

SuperPathways for ADAMTS9-AS2 Gene

No Data Available

Interacting Proteins for ADAMTS9-AS2 Gene

Gene Ontology (GO) - Biological Process for ADAMTS9-AS2 Gene


No data available for Pathways by source and SIGNOR curated interactions for ADAMTS9-AS2 Gene

Drugs & Compounds for ADAMTS9-AS2 Gene

No Compound Related Data Available

Transcripts for ADAMTS9-AS2 Gene

mRNA/cDNA for ADAMTS9-AS2 Gene

(6) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(5) RNA Central transcripts :

Unigene Clusters for ADAMTS9-AS2 Gene

ADAMTS9 antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTS9-AS2 Gene

No ASD Table

Relevant External Links for ADAMTS9-AS2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ADAMTS9-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADAMTS9-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for ADAMTS9-AS2 Gene

This gene is overexpressed in Ovary (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of ADAMTS9-AS2 Gene:


SOURCE GeneReport for Unigene cluster for ADAMTS9-AS2 Gene:

genes like me logo Genes that share expression patterns with ADAMTS9-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADAMTS9-AS2 Gene

Orthologs for ADAMTS9-AS2 Gene

Evolution for ADAMTS9-AS2 Gene

Gene Tree for ADAMTS9-AS2 (if available)
Gene Tree for ADAMTS9-AS2 (if available)

No data available for Orthologs for ADAMTS9-AS2 Gene

Paralogs for ADAMTS9-AS2 Gene

No data available for Paralogs for ADAMTS9-AS2 Gene

Variants for ADAMTS9-AS2 Gene

Sequence variations from dbSNP and Humsavar for ADAMTS9-AS2 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs6795735 not-provided, not provided 64,719,689(+) C/T intron_variant
rs1000009508 -- 64,801,434(+) C/T intron_variant
rs1000019185 -- 64,721,940(+) C/A intron_variant
rs1000020220 -- 64,973,005(+) A/T intron_variant
rs1000024041 -- 65,001,601(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ADAMTS9-AS2 Gene

Variant ID Type Subtype PubMed ID
esv2657718 CNV deletion 23128226
esv2759154 CNV loss 17122850
esv3561990 CNV deletion 23714750
esv3568818 CNV loss 25503493
esv3596410 CNV loss 21293372
nsv1148007 CNV insertion 26484159
nsv3853 CNV insertion 18451855
nsv435772 CNV deletion 17901297
nsv509829 OTHER sequence alteration 20534489
nsv523418 CNV loss 19592680
nsv834718 CNV gain 17160897

Additional Variant Information for ADAMTS9-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADAMTS9-AS2 Gene

Disorders for ADAMTS9-AS2 Gene

MalaCards: The human disease database

(2) MalaCards diseases for ADAMTS9-AS2 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
clear cell renal cell carcinoma
  • clear cell carcinoma of kidney
lung cancer
  • lung cancer, susceptibility to
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ADAMTS9-AS2

genes like me logo Genes that share disorders with ADAMTS9-AS2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ADAMTS9-AS2 Gene

Publications for ADAMTS9-AS2 Gene

  1. A new tumor suppressor LncRNA ADAMTS9-AS2 is regulated by DNMT1 and inhibits migration of glioma cells. (PMID: 24833086) Yao J … Zhu W (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2014) 2 3 58
  2. Downregulation of long non-coding RNA ENSG00000241684 is associated with poor prognosis in advanced clear cell renal cell carcinoma. (PMID: 29433989) Su H … Ye D (European journal of surgical oncology : the journal of the European Society of Surgical Oncology and the British Association of Surgical Oncology 2018) 3 58
  3. Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles. (PMID: 25187353) Goldstein JI … Sullivan PF (Nature communications 2014) 3 58
  4. White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder. (PMID: 23218918) Sprooten E … McIntosh AM (Psychiatry research 2013) 3 58
  5. Seven new loci associated with age-related macular degeneration. (PMID: 23455636) Fritsche LG … AMD Gene Consortium (Nature genetics 2013) 3 58

Products for ADAMTS9-AS2 Gene

Sources for ADAMTS9-AS2 Gene

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