Aliases for ADAMTS9-AS2 Gene

Subcategory (RNA class) for ADAMTS9-AS2 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ADAMTS9-AS2 Gene

  • ADAMTS9 Antisense RNA 2 2 3 5
  • ADAMTS9-AS2 2 5 165
  • ADAMTS9 Antisense RNA 2 (Non-Protein Coding) 2 3
  • NONHSAG035335.2 91
  • HSALNG0026583 164
  • HSALNG0026585 164
  • Lnc-ATXN7-15 165

External Ids for ADAMTS9-AS2 Gene

Summaries for ADAMTS9-AS2 Gene

GeneCards Summary for ADAMTS9-AS2 Gene

ADAMTS9-AS2 (ADAMTS9 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ADAMTS9-AS2 include Clear Cell Renal Cell Carcinoma and Malignant Glioma.

Additional gene information for ADAMTS9-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADAMTS9-AS2 Gene

Genomics for ADAMTS9-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ADAMTS9-AS2 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADAMTS9-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ADAMTS9-AS2 Gene

Genomic Locations for ADAMTS9-AS2 Gene
chr3:64,684,720-65,113,835
(GRCh38/hg38)
Size:
429,116 bases
Orientation:
Plus strand
chr3:64,670,546-64,997,143
(GRCh37/hg19)
Size:
326,598 bases
Orientation:
Plus strand

Genomic View for ADAMTS9-AS2 Gene

Genes around ADAMTS9-AS2 on UCSC Golden Path with GeneCards custom track
ADAMTS9-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ADAMTS9-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADAMTS9-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAMTS9-AS2 Gene

Proteins for ADAMTS9-AS2 Gene

Post-translational modifications for ADAMTS9-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADAMTS9-AS2 Gene

Domains & Families for ADAMTS9-AS2 Gene

Gene Families for ADAMTS9-AS2 Gene

genes like me logo Genes that share domains with ADAMTS9-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADAMTS9-AS2 Gene

Function for ADAMTS9-AS2 Gene

Phenotypes From GWAS Catalog for ADAMTS9-AS2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADAMTS9-AS2 Gene

Localization for ADAMTS9-AS2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ADAMTS9-AS2 gene
Compartment Confidence
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADAMTS9-AS2 Gene

Pathways & Interactions for ADAMTS9-AS2 Gene

PathCards logo

SuperPathways for ADAMTS9-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADAMTS9-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ADAMTS9-AS2 Gene

Drugs & Compounds for ADAMTS9-AS2 Gene

No Compound Related Data Available

Transcripts for ADAMTS9-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ADAMTS9-AS2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000027298C_9606 lncRNA 573 4

Ensembl: ENST00000485174 (view in UCSC) ,

LncBook: HSALNT0055613,

LNCipedia: ADAMTS9-AS2:5,

NONCODE: NONHSAT090265.2,

URS00003FEEE5_9606 lncRNA 3691 3

Ensembl: ENST00000460833 (view in UCSC) ,

LNCipedia: ADAMTS9-AS2:3,

NONCODE: NONHSAT090263.2,

URS000027B101_9606 lncRNA 2388 3

Ensembl: ENST00000474768 (view in UCSC) ,

LNCipedia: ADAMTS9-AS2:4,

NONCODE: NONHSAT090264.2,

URS000075C89F_9606 lncRNA 2228 2

HGNC: 42435,

RefSeq: NR_038264,

URS0000524D5D_9606 lncRNA 1970 2

Ensembl: ENST00000481312 (view in UCSC) ,

LNCipedia: ADAMTS9-AS2:6,

ADAMTS9-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ADAMTS9-AS2 Gene

4 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTS9-AS2 Gene

No ASD Table

Relevant External Links for ADAMTS9-AS2 Gene

GeneLoc Exon Structure for
ADAMTS9-AS2

Expression for ADAMTS9-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ADAMTS9-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for ADAMTS9-AS2 Gene

This gene is overexpressed in Ovary (x4.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ADAMTS9-AS2

SOURCE GeneReport for Unigene cluster for ADAMTS9-AS2 Gene:

Hs.660881
genes like me logo Genes that share expression patterns with ADAMTS9-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADAMTS9-AS2 Gene

Orthologs for ADAMTS9-AS2 Gene

Evolution for ADAMTS9-AS2 Gene

ENSEMBL:
Gene Tree for ADAMTS9-AS2 (if available)
TreeFam:
Gene Tree for ADAMTS9-AS2 (if available)

No data available for Orthologs for ADAMTS9-AS2 Gene

Paralogs for ADAMTS9-AS2 Gene

No data available for Paralogs for ADAMTS9-AS2 Gene

Variants for ADAMTS9-AS2 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ADAMTS9-AS2 Gene

SNP ID Clinical significance and condition Chr 03 pos Variation AA Info Type
719075 Benign: not provided 64,687,619(+) C/A SYNONYMOUS_VARIANT
722153 Likely Benign: not provided 64,686,733(+) G/A SYNONYMOUS_VARIANT
730289 Benign: not provided 64,686,610(+) G/A SYNONYMOUS_VARIANT
778087 Benign: not provided 64,686,825(+) C/A MISSENSE_VARIANT
791934 Benign: not provided 64,686,858(+) T/C MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for ADAMTS9-AS2 Gene

Structural Variations from Database of Genomic Variants (DGV) for ADAMTS9-AS2 Gene

Variant ID Type Subtype PubMed ID
esv2657718 CNV deletion 23128226
esv2759154 CNV loss 17122850
esv3561990 CNV deletion 23714750
esv3568818 CNV loss 25503493
esv3596410 CNV loss 21293372
nsv1148007 CNV insertion 26484159
nsv3853 CNV insertion 18451855
nsv435772 CNV deletion 17901297
nsv509829 OTHER sequence alteration 20534489
nsv523418 CNV loss 19592680
nsv834718 CNV gain 17160897

Additional Variant Information for ADAMTS9-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADAMTS9-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADAMTS9-AS2 Gene

Disorders for ADAMTS9-AS2 Gene

MalaCards: The human disease database

(3) MalaCards diseases for ADAMTS9-AS2 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
clear cell renal cell carcinoma
  • clear cell carcinoma of kidney
malignant glioma
  • glial cell tumor
lung cancer
  • adenocarcinoma of lung
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ADAMTS9-AS2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ADAMTS9-AS2 Gene

Publications for ADAMTS9-AS2 Gene

  1. Upregulated lncRNA ADAMTS9-AS2 suppresses progression of lung cancer through inhibition of miR-223-3p and promotion of TGFBR3. (PMID: 29707897) Liu C … Chen T (IUBMB life 2018) 2 3
  2. A new tumor suppressor LncRNA ADAMTS9-AS2 is regulated by DNMT1 and inhibits migration of glioma cells. (PMID: 24833086) Yao J … Zhu W (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2014) 2 3
  3. Long noncoding RNA ADAMTS9-AS2 suppresses the progression of esophageal cancer by mediating CDH3 promoter methylation. (PMID: 31621118) Liu D … Zhao S (Molecular carcinogenesis 2020) 3
  4. Bioinformatics Analysis of the Expression of Key Long Intergenic Non-Protein Coding RNA Genes in Bladder Cancer. (PMID: 32277695) Lin YZ … Wei Y (Medical science monitor : international medical journal of experimental and clinical research 2020) 3
  5. [Overexpression of the long non-coding RNA ADAMTS9-AS2 suppresses colorectal cancer proliferation and metastasis]. (PMID: 31413211) Bu X … Hu Y (Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences 2019) 3

Products for ADAMTS9-AS2 Gene

Sources for ADAMTS9-AS2 Gene