Aliases for ADAMTS9-AS2 Gene

Subcategory (RNA class) for ADAMTS9-AS2 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for ADAMTS9-AS2 Gene

  • ADAMTS9 Antisense RNA 2 2 3 5
  • ADAMTS9 Antisense RNA 2 (Non-Protein Coding) 2 3
  • ADAMTS9-AS2 2 170
  • HSALNG0026583 169
  • NONHSAG035335 94
  • HSALNG0026585 169
  • Lnc-ATXN7-15 170

External Ids for ADAMTS9-AS2 Gene

Summaries for ADAMTS9-AS2 Gene

GeneCards Summary for ADAMTS9-AS2 Gene

ADAMTS9-AS2 (ADAMTS9 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ADAMTS9-AS2 include Clear Cell Renal Cell Carcinoma and Malignant Glioma.

Additional gene information for ADAMTS9-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADAMTS9-AS2 Gene

Genomics for ADAMTS9-AS2 Gene

GeneHancer (GH) Regulatory Elements for ADAMTS9-AS2 Gene

Promoters and enhancers for ADAMTS9-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J063910 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.1 -772.1 -772067 4 ZNF24 ZBTB40 CTCF POLR2A MYC RAD21 ZNF148 NKRF ZFX SP1 ATXN7 5MWI_A-120 NONHSAG035318.2 SCAANT1 PSMD6-AS2 THOC7 THOC7-AS1 ENSG00000224479 ADAMTS9-AS2
GH03J065027 Enhancer 0.8 FANTOM5 Ensembl ENCODE 6.2 +343.2 343155 0.8 SP1 GTF2F1 POLR2A ZNF143 SMAD5 ADAMTS9-AS2 piR-38580-206 piR-33730-054
GH03J065019 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 4.4 +335.4 335369 3 FOXA1 RAD21 TEAD4 SP1 MAFK CBFA2T2 SMARCA4 PPARG TRIM24 IKZF1 ADAMTS9-AS2 piR-38580-206 piR-33730-054
GH03J065004 Enhancer 0.6 Ensembl ENCODE 8.2 +320.9 320908 2.9 NR2F2 JUND IKZF1 ADAMTS9-AS2 piR-38580-206 piR-33730-054
GH03J064992 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 4.6 +310.2 310181 5 HLF BCL6B TCF7L2 PRDM10 RXRB ZBTB20 SCRT2 ZXDB ZNF335 FEZF1 ADAMTS9-AS2 LOC105377124 piR-38580-206
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADAMTS9-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADAMTS9-AS2 Gene

Genomic Locations for ADAMTS9-AS2 Gene
chr3:64,684,720-65,113,835
(GRCh38/hg38)
Size:
429,116 bases
Orientation:
Plus strand
chr3:64,670,546-64,997,143
(GRCh37/hg19)
Size:
326,598 bases
Orientation:
Plus strand

Genomic View for ADAMTS9-AS2 Gene

Genes around ADAMTS9-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADAMTS9-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADAMTS9-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAMTS9-AS2 Gene

Proteins for ADAMTS9-AS2 Gene

Post-translational modifications for ADAMTS9-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADAMTS9-AS2 Gene

Domains & Families for ADAMTS9-AS2 Gene

Gene Families for ADAMTS9-AS2 Gene

genes like me logo Genes that share domains with ADAMTS9-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADAMTS9-AS2 Gene

Function for ADAMTS9-AS2 Gene

Phenotypes From GWAS Catalog for ADAMTS9-AS2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADAMTS9-AS2 Gene

Localization for ADAMTS9-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADAMTS9-AS2 Gene

Pathways & Interactions for ADAMTS9-AS2 Gene

PathCards logo

SuperPathways for ADAMTS9-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADAMTS9-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADAMTS9-AS2 Gene

Drugs & Compounds for ADAMTS9-AS2 Gene

No Compound Related Data Available

Transcripts for ADAMTS9-AS2 Gene

mRNA/cDNA for ADAMTS9-AS2 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(35) RNACentral transcripts :
(25) LNCipedia transcripts :
(15) LncBook transcripts :
(20) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTS9-AS2 Gene

No ASD Table

Relevant External Links for ADAMTS9-AS2 Gene

GeneLoc Exon Structure for
ADAMTS9-AS2
ECgene alternative splicing isoforms for
ADAMTS9-AS2

Expression for ADAMTS9-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADAMTS9-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for ADAMTS9-AS2 Gene

This gene is overexpressed in Ovary (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of ADAMTS9-AS2 Gene:

ADAMTS9-AS2

SOURCE GeneReport for Unigene cluster for ADAMTS9-AS2 Gene:

Hs.660881
genes like me logo Genes that share expression patterns with ADAMTS9-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADAMTS9-AS2 Gene

Orthologs for ADAMTS9-AS2 Gene

Evolution for ADAMTS9-AS2 Gene

ENSEMBL:
Gene Tree for ADAMTS9-AS2 (if available)
TreeFam:
Gene Tree for ADAMTS9-AS2 (if available)

No data available for Orthologs for ADAMTS9-AS2 Gene

Paralogs for ADAMTS9-AS2 Gene

No data available for Paralogs for ADAMTS9-AS2 Gene

Variants for ADAMTS9-AS2 Gene

Sequence variations from dbSNP and Humsavar for ADAMTS9-AS2 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs6795735 not-provided, not provided 64,719,689(+) C/A/G/T intron_variant
rs1000009508 -- 64,801,434(+) C/T intron_variant
rs1000019185 -- 64,721,940(+) C/A intron_variant
rs1000020220 -- 64,973,005(+) A/T intron_variant
rs1000024041 -- 65,001,601(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ADAMTS9-AS2 Gene

Variant ID Type Subtype PubMed ID
esv2657718 CNV deletion 23128226
esv2759154 CNV loss 17122850
esv3561990 CNV deletion 23714750
esv3568818 CNV loss 25503493
esv3596410 CNV loss 21293372
nsv1148007 CNV insertion 26484159
nsv3853 CNV insertion 18451855
nsv435772 CNV deletion 17901297
nsv509829 OTHER sequence alteration 20534489
nsv523418 CNV loss 19592680
nsv834718 CNV gain 17160897

Additional Variant Information for ADAMTS9-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADAMTS9-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADAMTS9-AS2 Gene

Disorders for ADAMTS9-AS2 Gene

MalaCards: The human disease database

(3) MalaCards diseases for ADAMTS9-AS2 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
clear cell renal cell carcinoma
  • clear cell carcinoma of kidney
malignant glioma
  • glial cell tumor
lung cancer
  • adenocarcinoma of lung
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ADAMTS9-AS2

genes like me logo Genes that share disorders with ADAMTS9-AS2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ADAMTS9-AS2 Gene

Publications for ADAMTS9-AS2 Gene

  1. Upregulated lncRNA ADAMTS9-AS2 suppresses progression of lung cancer through inhibition of miR-223-3p and promotion of TGFBR3. (PMID: 29707897) Liu C … Chen T (IUBMB life 2018) 2 3 56
  2. A new tumor suppressor LncRNA ADAMTS9-AS2 is regulated by DNMT1 and inhibits migration of glioma cells. (PMID: 24833086) Yao J … Zhu W (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2014) 2 3 56
  3. Downregulation of long non-coding RNA ENSG00000241684 is associated with poor prognosis in advanced clear cell renal cell carcinoma. (PMID: 29433989) Su H … Ye D (European journal of surgical oncology : the journal of the European Society of Surgical Oncology and the British Association of Surgical Oncology 2018) 3 56
  4. Down-regulation of lncRNA ADAMTS9-AS2 contributes to gastric cancer development via activation of PI3K/Akt pathway. (PMID: 30089248) Cao B … Yang G (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2018) 3 56
  5. LncRNA ADAMTS9-AS2 regulates ovarian cancer progression by targeting miR-182-5p/FOXF2 signaling pathway. (PMID: 30268751) Wang A … Li L (International journal of biological macromolecules 2018) 3 56

Products for ADAMTS9-AS2 Gene

Sources for ADAMTS9-AS2 Gene