Aliases for ADAMTS9-AS1 Gene

Subcategory (RNA class) for ADAMTS9-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ADAMTS9-AS1 Gene

  • ADAMTS9 Antisense RNA 1 2 3 5
  • ADAMTS9-AS1 2 5 165
  • ADAMTS9 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG035332.2 91
  • HSALNG0026576 164

External Ids for ADAMTS9-AS1 Gene

Summaries for ADAMTS9-AS1 Gene

GeneCards Summary for ADAMTS9-AS1 Gene

ADAMTS9-AS1 (ADAMTS9 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ADAMTS9-AS1 include Ovarian Epithelial Cancer and Malignant Glioma.

Additional gene information for ADAMTS9-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADAMTS9-AS1 Gene

Genomics for ADAMTS9-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ADAMTS9-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J064594 Enhancer 0.7 Ensembl ENCODE 16.5 +59.2 59198 1.4 SP1 NR2F2 RAD21 RXRA JUN MAX REST ADAMTS9-AS1 ADAMTS9 lnc-ATXN7-12 lnc-PRICKLE2-6 PRICKLE2
GH03J064611 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 10.5 +76.5 76482 1.8 SP1 SCRT2 CEBPB NR2F2 RCOR1 YY1 CHD2 GATA2 POLR2A RXRA ADAMTS9-AS1 lnc-ATXN7-12 lnc-PRICKLE2-6 ADAMTS9 PRICKLE2
GH03J064864 Enhancer 0.4 FANTOM5 9.8 +328.5 328483 0 ZFX BCLAF1 ADAMTS9-AS1 lnc-ATXN7-13 lnc-ADAMTS9-2 lnc-ADAMTS9-6 ADAMTS9 ADAMTS9-AS2 lnc-ATXN7-14
GH03J064860 Enhancer 0.3 Ensembl 9.8 +323.8 323756 1.3 ZFX NR2F2 ADAMTS9-AS1 lnc-ATXN7-13 lnc-ADAMTS9-6 piR-51137-074 ADAMTS9-AS2 ADAMTS9 lnc-ATXN7-14
GH03J064600 Enhancer 0.3 Ensembl 10.4 +64.3 64314 0.2 PRDM10 ADAMTS9-AS1 lnc-ATXN7-12 lnc-PRICKLE2-6 ADAMTS9 PRICKLE2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADAMTS9-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ADAMTS9-AS1 Gene

Genomic Locations for ADAMTS9-AS1 Gene
chr3:64,536,387-64,592,757
(GRCh38/hg38)
Size:
56,371 bases
Orientation:
Plus strand
chr3:64,547,014-64,575,765
(GRCh37/hg19)
Size:
28,752 bases
Orientation:
Plus strand

Genomic View for ADAMTS9-AS1 Gene

Genes around ADAMTS9-AS1 on UCSC Golden Path with GeneCards custom track
ADAMTS9-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ADAMTS9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADAMTS9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAMTS9-AS1 Gene

Proteins for ADAMTS9-AS1 Gene

Post-translational modifications for ADAMTS9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADAMTS9-AS1 Gene

Domains & Families for ADAMTS9-AS1 Gene

Gene Families for ADAMTS9-AS1 Gene

genes like me logo Genes that share domains with ADAMTS9-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADAMTS9-AS1 Gene

Function for ADAMTS9-AS1 Gene

Phenotypes From GWAS Catalog for ADAMTS9-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADAMTS9-AS1 Gene

Localization for ADAMTS9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADAMTS9-AS1 Gene

Pathways & Interactions for ADAMTS9-AS1 Gene

PathCards logo

SuperPathways for ADAMTS9-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADAMTS9-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ADAMTS9-AS1 Gene

Drugs & Compounds for ADAMTS9-AS1 Gene

No Compound Related Data Available

Transcripts for ADAMTS9-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ADAMTS9-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000812082_9606 lncRNA 841 4

Ensembl: ENST00000625636 (view in UCSC) ,

LncBook: HSALNT0055580,

LNCipedia: ADAMTS9-AS1:35,

NONCODE: NONHSAT193993.1,

URS00008120A4_9606 lncRNA 827 4

Ensembl: ENST00000630336 (view in UCSC) ,

LncBook: HSALNT0055576,

LNCipedia: ADAMTS9-AS1:31,

NONCODE: NONHSAT193990.1,

URS00001B2136_9606 lncRNA 822 4

Ensembl: ENST00000466225 (view in UCSC) ,

LncBook: HSALNT0055574,

LNCipedia: ADAMTS9-AS1:29,

NONCODE: NONHSAT090257.2,

URS00008118F0_9606 lncRNA 736 4

Ensembl: ENST00000625832 (view in UCSC) ,

LncBook: HSALNT0055584,

LNCipedia: ADAMTS9-AS1:38,

NONCODE: NONHSAT193994.1,

URS0000811D6A_9606 lncRNA 658 4

Ensembl: ENST00000628461 (view in UCSC) ,

LncBook: HSALNT0055578,

LNCipedia: ADAMTS9-AS1:34,

NONCODE: NONHSAT193992.1,

ADAMTS9-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ADAMTS9-AS1 Gene

4 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTS9-AS1 Gene

No ASD Table

Relevant External Links for ADAMTS9-AS1 Gene

GeneLoc Exon Structure for
ADAMTS9-AS1

Expression for ADAMTS9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ADAMTS9-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ADAMTS9-AS1 Gene

This gene is overexpressed in Kidney - Cortex (x10.2), Esophagus - Muscularis (x4.8), and Colon - Sigmoid (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ADAMTS9-AS1

genes like me logo Genes that share expression patterns with ADAMTS9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADAMTS9-AS1 Gene

Orthologs for ADAMTS9-AS1 Gene

Evolution for ADAMTS9-AS1 Gene

ENSEMBL:
Gene Tree for ADAMTS9-AS1 (if available)
TreeFam:
Gene Tree for ADAMTS9-AS1 (if available)

No data available for Orthologs for ADAMTS9-AS1 Gene

Paralogs for ADAMTS9-AS1 Gene

No data available for Paralogs for ADAMTS9-AS1 Gene

Variants for ADAMTS9-AS1 Gene

Additional dbSNP identifiers (rs#s) for ADAMTS9-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ADAMTS9-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv289n21 CNV gain 19592680
nsv834718 CNV gain 17160897

Additional Variant Information for ADAMTS9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADAMTS9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ADAMTS9-AS1 Gene

Disorders for ADAMTS9-AS1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for ADAMTS9-AS1 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
ovarian epithelial cancer
  • eoc
malignant glioma
  • glial cell tumor
ovarian cyst
  • ovarian cysts
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ADAMTS9-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ADAMTS9-AS1 Gene

Publications for ADAMTS9-AS1 Gene

  1. LncRNAs expression profiling in normal ovary, benign ovarian cyst and malignant epithelial ovarian cancer. (PMID: 27941916) Wang H … Xu P (Scientific reports 2016) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for ADAMTS9-AS1 Gene

Sources for ADAMTS9-AS1 Gene