Aliases for ADAMTS9-AS1 Gene

Subcategory (RNA class) for ADAMTS9-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for ADAMTS9-AS1 Gene

  • ADAMTS9 Antisense RNA 1 2 3 5
  • ADAMTS9 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ADAMTS9-AS1 2 170
  • HSALNG0026576 169
  • NONHSAG035332 94

External Ids for ADAMTS9-AS1 Gene

Summaries for ADAMTS9-AS1 Gene

GeneCards Summary for ADAMTS9-AS1 Gene

ADAMTS9-AS1 (ADAMTS9 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ADAMTS9-AS1 include Ovarian Epithelial Cancer and Malignant Glioma.

Additional gene information for ADAMTS9-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADAMTS9-AS1 Gene

Genomics for ADAMTS9-AS1 Gene

GeneHancer (GH) Regulatory Elements for ADAMTS9-AS1 Gene

Promoters and enhancers for ADAMTS9-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J064594 Enhancer 0.7 Ensembl ENCODE 16.5 +59.2 59198 1.4 RXRA SP1 NR2F2 RAD21 JUN MAX REST ADAMTS9-AS1 ADAMTS9 lnc-ATXN7-12 lnc-PRICKLE2-6
GH03J064611 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 10.5 +76.5 76482 1.8 POLR2A RXRA SP1 SCRT2 RCOR1 NR2F2 ADAMTS9-AS1 lnc-ATXN7-12 lnc-PRICKLE2-6 ADAMTS9
GH03J063583 Enhancer 0.6 Ensembl 11.5 -952.5 -952486 2.2 TFE3 ZNF639 CAVIN1 SOX13 ZNF766 E2F5 CUX1 ZNF395 PAX8 NR2F6 ADAMTS9-AS1 SNTN SYNPR HSALNG0026533 piR-57460-495 SYNPR-AS1
GH03J064860 Enhancer 0.3 Ensembl 9.8 +323.8 323756 1.3 ZFX NR2F2 ADAMTS9-AS1 lnc-ATXN7-13 lnc-ADAMTS9-6 piR-51137-074 ADAMTS9-AS2 lnc-ATXN7-14
GH03J064864 Enhancer 0.3 FANTOM5 9.8 +328.5 328483 0 ZFX ADAMTS9-AS1 lnc-ATXN7-13 lnc-ADAMTS9-2 lnc-ADAMTS9-6 ADAMTS9-AS2 lnc-ATXN7-14
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADAMTS9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADAMTS9-AS1 Gene

Genomic Locations for ADAMTS9-AS1 Gene
chr3:64,536,387-64,592,757
(GRCh38/hg38)
Size:
56,371 bases
Orientation:
Plus strand
chr3:64,547,014-64,575,765
(GRCh37/hg19)
Size:
28,752 bases
Orientation:
Plus strand

Genomic View for ADAMTS9-AS1 Gene

Genes around ADAMTS9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADAMTS9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADAMTS9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAMTS9-AS1 Gene

Proteins for ADAMTS9-AS1 Gene

Post-translational modifications for ADAMTS9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADAMTS9-AS1 Gene

Domains & Families for ADAMTS9-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADAMTS9-AS1 Gene

Function for ADAMTS9-AS1 Gene

Phenotypes From GWAS Catalog for ADAMTS9-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADAMTS9-AS1 Gene

Localization for ADAMTS9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADAMTS9-AS1 Gene

Pathways & Interactions for ADAMTS9-AS1 Gene

PathCards logo

SuperPathways for ADAMTS9-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADAMTS9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADAMTS9-AS1 Gene

Drugs & Compounds for ADAMTS9-AS1 Gene

No Compound Related Data Available

Transcripts for ADAMTS9-AS1 Gene

mRNA/cDNA for ADAMTS9-AS1 Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(21) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(36) RNACentral transcripts :
(23) NONCODE transcripts :
(23) LncBook transcripts :
(17) LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTS9-AS1 Gene

No ASD Table

Relevant External Links for ADAMTS9-AS1 Gene

GeneLoc Exon Structure for
ADAMTS9-AS1
ECgene alternative splicing isoforms for
ADAMTS9-AS1

Expression for ADAMTS9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADAMTS9-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ADAMTS9-AS1 Gene

This gene is overexpressed in Kidney - Cortex (x10.2), Esophagus - Muscularis (x4.8), and Colon - Sigmoid (x4.4).
genes like me logo Genes that share expression patterns with ADAMTS9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADAMTS9-AS1 Gene

Orthologs for ADAMTS9-AS1 Gene

Evolution for ADAMTS9-AS1 Gene

ENSEMBL:
Gene Tree for ADAMTS9-AS1 (if available)
TreeFam:
Gene Tree for ADAMTS9-AS1 (if available)

No data available for Orthologs for ADAMTS9-AS1 Gene

Paralogs for ADAMTS9-AS1 Gene

No data available for Paralogs for ADAMTS9-AS1 Gene

Variants for ADAMTS9-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADAMTS9-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000050823 -- 64,568,031(+) G/A intron_variant
rs1000117550 -- 64,565,852(+) A/G intron_variant
rs1000224381 -- 64,573,932(+) G/T intron_variant
rs1000257439 -- 64,583,287(+) G/T intron_variant, non_coding_transcript_variant
rs1000354430 -- 64,579,172(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ADAMTS9-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv289n21 CNV gain 19592680
nsv834718 CNV gain 17160897

Additional Variant Information for ADAMTS9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADAMTS9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADAMTS9-AS1 Gene

Disorders for ADAMTS9-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for ADAMTS9-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
ovarian epithelial cancer
  • eoc
malignant glioma
  • glial cell tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ADAMTS9-AS1

genes like me logo Genes that share disorders with ADAMTS9-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ADAMTS9-AS1 Gene

Publications for ADAMTS9-AS1 Gene

  1. LncRNAs expression profiling in normal ovary, benign ovarian cyst and malignant epithelial ovarian cancer. (PMID: 27941916) Wang H … Xu P (Scientific reports 2016) 2 3 56
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for ADAMTS9-AS1 Gene

Sources for ADAMTS9-AS1 Gene