Aliases for ADAMTS19-AS1 Gene

Subcategory (RNA class) for ADAMTS19-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ADAMTS19-AS1 Gene

  • ADAMTS19 Antisense RNA 1 2 3 5
  • ADAMTS19-AS1 2 5 165
  • RP11-346A9.1 2 3
  • NONHSAG041485.2 91
  • HSALNG0044748 164

External Ids for ADAMTS19-AS1 Gene

Previous GeneCards Identifiers for ADAMTS19-AS1 Gene

  • GC05M128796
  • GC00U935695

Summaries for ADAMTS19-AS1 Gene

GeneCards Summary for ADAMTS19-AS1 Gene

ADAMTS19-AS1 (ADAMTS19 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ADAMTS19-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADAMTS19-AS1 Gene

Genomics for ADAMTS19-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ADAMTS19-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J129458 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +1.1 1057 4.5 CTCF PRDM10 KDM1A TARDBP PRDM1 ZIC2 ZSCAN4 PATZ1 ZNF501 POLR2A ADAMTS19 ADAMTS19-AS1 MINAR2
GH05J129463 Enhancer 0.3 Ensembl 605 -1.9 -1890 0.6 PKNOX1 ADAMTS19-AS1 ADAMTS19 piR-61291-017 MINAR2
GH05J129398 Enhancer 0.7 Ensembl ENCODE 11.3 +64.1 64110 5 FOXA2 USF1 PKNOX1 FOXA1 TOE1 NANOG USF2 POU5F1 MIR4460 ADAMTS19 ADAMTS19-AS1 ISOC1
GH05J129410 Enhancer 0.6 Ensembl 11.6 +50.9 50910 1.4 CREB1 TEAD4 ZIC2 POLR2A PKNOX1 WT1 GATA3 ZNF18 SIN3A TCF7L2 ADAMTS19 ADAMTS19-AS1 MIR4460 ISOC1
GH05J129495 Enhancer 0.3 ENCODE 11.2 -35.2 -35223 2.7 SMARCA4 ADAMTS19 ADAMTS19-AS1 piR-61291-017 MINAR2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADAMTS19-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ADAMTS19-AS1 Gene

Genomic Locations for ADAMTS19-AS1 Gene
chr5:129,424,782-129,461,611
(GRCh38/hg38)
Size:
36,830 bases
Orientation:
Minus strand

Genomic View for ADAMTS19-AS1 Gene

Genes around ADAMTS19-AS1 on UCSC Golden Path with GeneCards custom track
ADAMTS19-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ADAMTS19-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADAMTS19-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAMTS19-AS1 Gene

Proteins for ADAMTS19-AS1 Gene

Post-translational modifications for ADAMTS19-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADAMTS19-AS1 Gene

Domains & Families for ADAMTS19-AS1 Gene

Gene Families for ADAMTS19-AS1 Gene

genes like me logo Genes that share domains with ADAMTS19-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADAMTS19-AS1 Gene

Function for ADAMTS19-AS1 Gene

Phenotypes From GWAS Catalog for ADAMTS19-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADAMTS19-AS1 Gene

Localization for ADAMTS19-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADAMTS19-AS1 Gene

Pathways & Interactions for ADAMTS19-AS1 Gene

PathCards logo

SuperPathways for ADAMTS19-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADAMTS19-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ADAMTS19-AS1 Gene

Drugs & Compounds for ADAMTS19-AS1 Gene

No Compound Related Data Available

Transcripts for ADAMTS19-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ADAMTS19-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000D55BF_9606 lncRNA 786 5

HGNC: 40797,

RefSeq: NR_125748,

Ensembl: ENST00000502827 (view in UCSC) ,

LNCipedia: ADAMTS19-AS1:2,

NONCODE: NONHSAT103669.2,

URS0000EF2B5B_9606 lncRNA 3103 1

Ensembl: ENST00000661962 (view in UCSC) ,

URS0000D584A8_9606 lncRNA 10576 2

LncBook: HSALNT0094271,

LNCipedia: ADAMTS19-AS1:3,

URS0000D5C481_9606 lncRNA 7615 2

LncBook: HSALNT0094273,

LNCipedia: ADAMTS19-AS1:1,

URS0000D5AC20_9606 lncRNA 15495 1

LNCipedia: ADAMTS19-AS1:9,

ADAMTS19-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ADAMTS19-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTS19-AS1 Gene

No ASD Table

Relevant External Links for ADAMTS19-AS1 Gene

GeneLoc Exon Structure for
ADAMTS19-AS1

Expression for ADAMTS19-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ADAMTS19-AS1 Gene

genes like me logo Genes that share expression patterns with ADAMTS19-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADAMTS19-AS1 Gene

Orthologs for ADAMTS19-AS1 Gene

Evolution for ADAMTS19-AS1 Gene

ENSEMBL:
Gene Tree for ADAMTS19-AS1 (if available)
TreeFam:
Gene Tree for ADAMTS19-AS1 (if available)

No data available for Orthologs for ADAMTS19-AS1 Gene

Paralogs for ADAMTS19-AS1 Gene

No data available for Paralogs for ADAMTS19-AS1 Gene

Variants for ADAMTS19-AS1 Gene

Additional dbSNP identifiers (rs#s) for ADAMTS19-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ADAMTS19-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2752060 CNV gain 17911159
esv2759377 CNV loss 17122850
esv2763498 CNV gain 21179565
nsv599704 CNV gain 21841781
nsv830486 CNV gain 17160897

Additional Variant Information for ADAMTS19-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADAMTS19-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ADAMTS19-AS1 Gene

Disorders for ADAMTS19-AS1 Gene

Additional Disease Information for ADAMTS19-AS1

No disorders were found for ADAMTS19-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADAMTS19-AS1 Gene

Publications for ADAMTS19-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for ADAMTS19-AS1 Gene

Sources for ADAMTS19-AS1 Gene