Aliases for ADAMTS19-AS1 Gene

Subcategory (RNA class) for ADAMTS19-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for ADAMTS19-AS1 Gene

  • ADAMTS19 Antisense RNA 1 2 3 5
  • ADAMTS19-AS1 2 170
  • HSALNG0044748 169
  • NONHSAG041485 94
  • RP11-346A9.1 3

External Ids for ADAMTS19-AS1 Gene

Previous GeneCards Identifiers for ADAMTS19-AS1 Gene

  • GC05M128796
  • GC00U935695

Summaries for ADAMTS19-AS1 Gene

GeneCards Summary for ADAMTS19-AS1 Gene

ADAMTS19-AS1 (ADAMTS19 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ADAMTS19-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ADAMTS19-AS1 Gene

Genomics for ADAMTS19-AS1 Gene

GeneHancer (GH) Regulatory Elements for ADAMTS19-AS1 Gene

Promoters and enhancers for ADAMTS19-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J129458 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 +1.1 1057 4.5 CTCF SREBF1 TCF7L2 ZNF121 MNT SP1 SP7 MYC ZSCAN21 PRDM1 ADAMTS19 ADAMTS19-AS1
GH05J129463 Enhancer 0.3 Ensembl 755 -1.9 -1890 0.6 PKNOX1 ADAMTS19-AS1 ADAMTS19 piR-61291-017
GH05J129398 Enhancer 0.7 Ensembl ENCODE 11.3 +64.1 64110 5 POU5F1 PKNOX1 USF1 FOXA2 FOXA1 NANOG USF2 MIR4460 ADAMTS19 ADAMTS19-AS1
GH05J129410 Enhancer 0.5 Ensembl 11.6 +50.9 50910 1.4 TCF7L2 CREB1 PKNOX1 ZIC2 POLR2A ZNF18 GATA3 WT1 SIN3A ADAMTS19 ADAMTS19-AS1 MIR4460
GH05J129495 Enhancer 0.2 ENCODE 11.2 -35.2 -35223 2.7 ADAMTS19 ADAMTS19-AS1 piR-61291-017
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ADAMTS19-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADAMTS19-AS1 Gene

Genomic Locations for ADAMTS19-AS1 Gene
chr5:129,424,782-129,461,611
(GRCh38/hg38)
Size:
36,830 bases
Orientation:
Minus strand

Genomic View for ADAMTS19-AS1 Gene

Genes around ADAMTS19-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADAMTS19-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADAMTS19-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAMTS19-AS1 Gene

Proteins for ADAMTS19-AS1 Gene

Post-translational modifications for ADAMTS19-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADAMTS19-AS1 Gene

Domains & Families for ADAMTS19-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ADAMTS19-AS1 Gene

Function for ADAMTS19-AS1 Gene

Phenotypes From GWAS Catalog for ADAMTS19-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADAMTS19-AS1 Gene

Localization for ADAMTS19-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADAMTS19-AS1 Gene

Pathways & Interactions for ADAMTS19-AS1 Gene

PathCards logo

SuperPathways for ADAMTS19-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ADAMTS19-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADAMTS19-AS1 Gene

Drugs & Compounds for ADAMTS19-AS1 Gene

No Compound Related Data Available

Transcripts for ADAMTS19-AS1 Gene

mRNA/cDNA for ADAMTS19-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(10) RNACentral transcripts :
(9) LNCipedia transcripts :
(2) LncBook transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTS19-AS1 Gene

No ASD Table

Relevant External Links for ADAMTS19-AS1 Gene

GeneLoc Exon Structure for
ADAMTS19-AS1
ECgene alternative splicing isoforms for
ADAMTS19-AS1

Expression for ADAMTS19-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADAMTS19-AS1 Gene

genes like me logo Genes that share expression patterns with ADAMTS19-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADAMTS19-AS1 Gene

Orthologs for ADAMTS19-AS1 Gene

Evolution for ADAMTS19-AS1 Gene

ENSEMBL:
Gene Tree for ADAMTS19-AS1 (if available)
TreeFam:
Gene Tree for ADAMTS19-AS1 (if available)

No data available for Orthologs for ADAMTS19-AS1 Gene

Paralogs for ADAMTS19-AS1 Gene

No data available for Paralogs for ADAMTS19-AS1 Gene

Variants for ADAMTS19-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADAMTS19-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000963252 -- 129,460,332(-) C/G intron_variant
rs1001799687 -- 129,461,591(-) C/A upstream_transcript_variant
rs1002400093 -- 129,461,915(-) A/G upstream_transcript_variant
rs10036717 -- 129,462,217(-) T/A upstream_transcript_variant
rs10044865 -- 129,462,248(-) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ADAMTS19-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2752060 CNV gain 17911159
esv2759377 CNV loss 17122850
esv2763498 CNV gain 21179565
nsv599704 CNV gain 21841781
nsv830486 CNV gain 17160897

Additional Variant Information for ADAMTS19-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADAMTS19-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADAMTS19-AS1 Gene

Disorders for ADAMTS19-AS1 Gene

Additional Disease Information for ADAMTS19-AS1

No disorders were found for ADAMTS19-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADAMTS19-AS1 Gene

Publications for ADAMTS19-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

Products for ADAMTS19-AS1 Gene

Sources for ADAMTS19-AS1 Gene