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Aliases for ADAM5 Gene

Aliases for ADAM5 Gene

  • ADAM Metallopeptidase Domain 5 (Pseudogene) 2 3 5
  • A Disintegrin And Metalloproteinase Domain 5 2 3
  • TMDC II 3 4
  • ADAM5P 3 4
  • Putative Transmembrane Metalloproteinase-Like, Disintegrin-Like, And Cysteine-Rich Protein II 4
  • ADAM Metallopeptidase Domain 5, Pseudogene 2
  • TMDCII 3
  • TMDC2 4

External Ids for ADAM5 Gene

Previous HGNC Symbols for ADAM5 Gene

  • ADAM5P

Previous GeneCards Identifiers for ADAM5 Gene

  • GC00U990448
  • GC08P038913
  • GC08P039190
  • GC08P039191

Summaries for ADAM5 Gene

GeneCards Summary for ADAM5 Gene

ADAM5 (ADAM Metallopeptidase Domain 5 (Pseudogene)) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include metalloendopeptidase activity.

UniProtKB/Swiss-Prot for ADAM5 Gene

  • This is a non catalytic metalloprotease-like protein.

Additional gene information for ADAM5 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADAM5 Gene

Genomics for ADAM5 Gene

GeneHancer (GH) Regulatory Elements for ADAM5 Gene

Promoters and enhancers for ADAM5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J038379 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.6 -931.1 -931059 8.1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 ZNF263 SP3 NFYC NSD3 LETM2 ENSG00000272092 DDHD2 RPS20P22 ERLIN2 ASH2L TM2D2 ENSG00000255201 ENSG00000254306
GH08J039581 Enhancer 0.6 ENCODE 61 +267.4 267366 1.8 MEIS2 PKNOX1 SOX6 TAL1 CBFA2T3 TCF12 CTBP1 NCOR1 CBFA2T2 KDM1A ADAM5 LOC100130964 ADAM3A ADAM18 GC08P039555
GH08J038764 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 14.6 -546.2 -546195 7.5 HDGF PKNOX1 FOXA2 SMAD1 ARID4B SIN3A YBX1 ZNF2 IRF4 YY1 ENSG00000255201 DDHD2 ADGRA2 NSD3 TACC1 FGFR1 TM2D2 LETM2 EIF4EBP1 ADAM5
GH08J038565 Enhancer 0.9 ENCODE 14.6 -748.1 -748075 2.5 FOXA2 FEZF1 ZNF48 TCF12 ZNF121 ZNF766 ZNF213 KLF7 MIER2 REST LOC105379384 ADAM5 ENSG00000254306 ADAM3A LOC100130964 ADGRA2 TM2D2 ERLIN2 GC08P038579
GH08J039580 Enhancer 0.2 ENCODE 29.1 +265.9 265926 0.8 ADAM5 LOC100130964 ADAM18 GC08P039555
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ADAM5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADAM5 Gene

Genomic Locations for ADAM5 Gene
chr8:39,314,591-39,417,378
(GRCh38/hg38)
Size:
102,788 bases
Orientation:
Plus strand
chr8:39,172,110-39,274,897
(GRCh37/hg19)
Size:
102,788 bases
Orientation:
Plus strand

Genomic View for ADAM5 Gene

Genes around ADAM5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADAM5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADAM5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAM5 Gene

Proteins for ADAM5 Gene

  • Protein details for ADAM5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NVV9-ADAM5_HUMAN
    Recommended name:
    Putative disintegrin and metalloproteinase domain-containing protein 5
    Protein Accession:
    Q6NVV9
    Secondary Accessions:
    • A8MW71
    • Q4G196

    Protein attributes for ADAM5 Gene

    Size:
    412 amino acids
    Molecular mass:
    47181 Da
    Quaternary structure:
    • Interacts with TEX101.

    Alternative splice isoforms for ADAM5 Gene

neXtProt entry for ADAM5 Gene

Post-translational modifications for ADAM5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADAM5 Gene

Domains & Families for ADAM5 Gene

Gene Families for ADAM5 Gene

Protein Domains for ADAM5 Gene

Suggested Antigen Peptide Sequences for ADAM5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ADAM5: view

No data available for UniProtKB/Swiss-Prot for ADAM5 Gene

Function for ADAM5 Gene

Molecular function for ADAM5 Gene

UniProtKB/Swiss-Prot Function:
This is a non catalytic metalloprotease-like protein.

Phenotypes From GWAS Catalog for ADAM5 Gene

Gene Ontology (GO) - Molecular Function for ADAM5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with ADAM5: view

Animal Model Products

  • Taconic Biosciences Mouse Models for ADAM5

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADAM5 Gene

Localization for ADAM5 Gene

Gene Ontology (GO) - Cellular Components for ADAM5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with ADAM5: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for ADAM5 Gene

Pathways & Interactions for ADAM5 Gene

SuperPathways for ADAM5 Gene

No Data Available

Interacting Proteins for ADAM5 Gene

Gene Ontology (GO) - Biological Process for ADAM5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with ADAM5: view

No data available for Pathways by source and SIGNOR curated interactions for ADAM5 Gene

Drugs & Compounds for ADAM5 Gene

No Compound Related Data Available

Transcripts for ADAM5 Gene

mRNA/cDNA for ADAM5 Gene

(1) REFSEQ mRNAs :
(11) Additional mRNA sequences :
(34) Selected AceView cDNA sequences:
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ADAM5 Gene

ADAM metallopeptidase domain 5, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ADAM5 Gene

No ASD Table

Relevant External Links for ADAM5 Gene

GeneLoc Exon Structure for
ADAM5
ECgene alternative splicing isoforms for
ADAM5

Expression for ADAM5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADAM5 Gene

mRNA differential expression in normal tissues according to GTEx for ADAM5 Gene

This gene is overexpressed in Testis (x52.4).

Protein differential expression in normal tissues from HIPED for ADAM5 Gene

This gene is overexpressed in Pancreas (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ADAM5 Gene



Protein tissue co-expression partners for ADAM5 Gene

NURSA nuclear receptor signaling pathways regulating expression of ADAM5 Gene:

ADAM5

SOURCE GeneReport for Unigene cluster for ADAM5 Gene:

Hs.369765

mRNA Expression by UniProt/SwissProt for ADAM5 Gene:

Q6NVV9-ADAM5_HUMAN
Tissue specificity: Highly expressed in testis.
genes like me logo Genes that share expression patterns with ADAM5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADAM5 Gene

Orthologs for ADAM5 Gene

Evolution for ADAM5 Gene

ENSEMBL:
Gene Tree for ADAM5 (if available)
TreeFam:
Gene Tree for ADAM5 (if available)

No data available for Orthologs for ADAM5 Gene

Paralogs for ADAM5 Gene

(1) SIMAP similar genes for ADAM5 Gene using alignment to 1 proteins:

  • ADAM5_HUMAN
genes like me logo Genes that share paralogs with ADAM5: view

No data available for Paralogs for ADAM5 Gene

Variants for ADAM5 Gene

Sequence variations from dbSNP and Humsavar for ADAM5 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000053307 -- 39,375,184(+) G/A intron_variant
rs1000071172 -- 39,354,956(+) A/G intron_variant
rs1000144539 -- 39,334,829(+) G/A intron_variant
rs1000192776 -- 39,415,932(+) A/T intron_variant
rs1000194882 -- 39,360,366(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ADAM5 Gene

Variant ID Type Subtype PubMed ID
dgv1179n67 CNV loss 20364138
dgv12091n54 CNV gain 21841781
dgv12092n54 CNV loss 21841781
dgv12093n54 CNV gain 21841781
dgv12094n54 CNV gain+loss 21841781
dgv12095n54 CNV loss 21841781
dgv12096n54 CNV loss 21841781
dgv12097n54 CNV loss 21841781
dgv12098n54 CNV gain+loss 21841781
dgv12099n54 CNV gain 21841781
dgv12100n54 CNV gain+loss 21841781
dgv12101n54 CNV loss 21841781
dgv12102n54 CNV gain+loss 21841781
dgv12103n54 CNV loss 21841781
dgv1282e199 CNV deletion 23128226
dgv146n17 CNV loss 16327808
esv2759608 CNV gain+loss 17122850
esv2736900 CNV deletion 23290073
esv2421469 CNV deletion 20811451
esv21867 CNV gain+loss 19812545
esv1005931 CNV loss 20482838
dgv7176n100 CNV loss 25217958
dgv7175n100 CNV gain 25217958
dgv7174n100 CNV loss 25217958
dgv7173n100 CNV gain+loss 25217958
dgv7172n100 CNV gain 25217958
dgv7171n100 CNV loss 25217958
dgv7170n100 CNV gain+loss 25217958
dgv7169n100 CNV gain 25217958
dgv7168n100 CNV loss 25217958
dgv7167n100 CNV gain 25217958
dgv7166n100 CNV gain 25217958
dgv67e213 CNV loss 24956385
dgv3807n106 CNV deletion 24896259
dgv35e209 CNV deletion 24192839
dgv266n111 CNV deletion 26073780
dgv2068e212 CNV loss 25503493
dgv2067e212 CNV gain 25503493
dgv2066e212 CNV gain 25503493
dgv181e180 CNV loss 20482838
nsv972230 CNV deletion 23825009
nsv951129 CNV deletion 24416366
nsv8331 CNV gain+loss 18304495
nsv820723 CNV deletion 20802225
nsv819496 CNV gain 19587683
nsv6163 CNV deletion 18451855
nsv611021 CNV loss 21841781
nsv610976 CNV gain 21841781
nsv610974 CNV loss 21841781
nsv610958 CNV gain 21841781
nsv610957 CNV gain 21841781
nsv528858 CNV loss 19592680
nsv527334 CNV loss 19592680
nsv515081 CNV loss 21397061
nsv511391 CNV gain 21212237
nsv508503 CNV deletion 20534489
nsv442511 CNV loss 18776908
nsv438050 CNV loss 16468122
nsv433493 CNV loss 18776910
nsv428198 CNV gain 18775914
nsv1074232 CNV deletion 25765185
nsv1024969 CNV gain 25217958
nsv1015371 CNV loss 25217958
esv995573 CNV deletion 20482838
esv994752 CNV gain 20482838
esv3891385 CNV loss 25118596
esv3891383 CNV loss 25118596
esv3891382 CNV loss 25118596
esv3616948 CNV loss 21293372
esv3616947 CNV loss 21293372
esv3572689 CNV loss 25503493
esv3543387 CNV deletion 23714750
esv3447334 CNV insertion 20981092
esv33764 CNV loss 17666407
esv32816 CNV loss 17666407
esv2764074 CNV gain+loss 21179565
esv2761164 CNV loss 21179565

Additional Variant Information for ADAM5 Gene

Human Gene Mutation Database (HGMD)
ADAM5
SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADAM5

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADAM5 Gene

Disorders for ADAM5 Gene

Additional Disease Information for ADAM5

No disorders were found for ADAM5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADAM5 Gene

Publications for ADAM5 Gene

  1. Transcripts encoding the sperm surface protein tMDC II are non-functional in the human. (PMID: 10417343) Frayne J … Hall L (The Biochemical journal 1999) 2 3 4 22 58
  2. Chromosomal assignment of four testis-expressed mouse genes from a new family of transmembrane proteins (ADAMs) involved in cell-cell adhesion and fusion. (PMID: 8786143) Cho C … Myles DG (Genomics 1996) 2 3 22 58
  3. A Global Analysis of the Receptor Tyrosine Kinase-Protein Phosphatase Interactome. (PMID: 28065597) Yao Z … Stagljar I (Molecular cell 2017) 3 58
  4. A genome-wide study of inherited deletions identified two regions associated with nonsyndromic isolated oral clefts. (PMID: 25776870) Younkin SG … Ruczinski I (Birth defects research. Part A, Clinical and molecular teratology 2015) 3 58
  5. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang ZD … Gerstein M (Genome biology 2010) 3 58

Products for ADAM5 Gene

Sources for ADAM5 Gene

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