Aliases for ACVR2B-AS1 Gene

Subcategory (RNA class) for ACVR2B-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ACVR2B-AS1 Gene

  • ACVR2B Antisense RNA 1 2 3 5
  • ACVR2B-AS1 2 5 165
  • ACVR2B Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG034796.2 91

External Ids for ACVR2B-AS1 Gene

Summaries for ACVR2B-AS1 Gene

GeneCards Summary for ACVR2B-AS1 Gene

ACVR2B-AS1 (ACVR2B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ACVR2B-AS1 include Heterotaxy, Visceral, 4, Autosomal and Uterine Corpus Endometrial Carcinoma.

Additional gene information for ACVR2B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ACVR2B-AS1 Gene

Genomics for ACVR2B-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ACVR2B-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ACVR2B-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ACVR2B-AS1 Gene

Genomic Locations for ACVR2B-AS1 Gene
chr3:38,444,886-38,455,452
(GRCh38/hg38)
Size:
10,567 bases
Orientation:
Minus strand
chr3:38,492,518-38,496,311
(GRCh37/hg19)
Size:
3,794 bases
Orientation:
Minus strand

Genomic View for ACVR2B-AS1 Gene

Genes around ACVR2B-AS1 on UCSC Golden Path with GeneCards custom track
ACVR2B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ACVR2B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACVR2B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACVR2B-AS1 Gene

Proteins for ACVR2B-AS1 Gene

Post-translational modifications for ACVR2B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACVR2B-AS1 Gene

Domains & Families for ACVR2B-AS1 Gene

Gene Families for ACVR2B-AS1 Gene

genes like me logo Genes that share domains with ACVR2B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ACVR2B-AS1 Gene

Function for ACVR2B-AS1 Gene

Phenotypes From GWAS Catalog for ACVR2B-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACVR2B-AS1 Gene

Localization for ACVR2B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACVR2B-AS1 Gene

Pathways & Interactions for ACVR2B-AS1 Gene

PathCards logo

SuperPathways for ACVR2B-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACVR2B-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ACVR2B-AS1 Gene

Drugs & Compounds for ACVR2B-AS1 Gene

No Compound Related Data Available

Transcripts for ACVR2B-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ACVR2B-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004374A2_9606 lncRNA 2517 5

HGNC: 44161,

RefSeq: NR_028389,

Ensembl: ENST00000441531 (view in UCSC) ,

LNCipedia: ACVR2B-AS1:1,

NONCODE: NONHSAT089074.2,

URS00008B7E98_9606 lncRNA 2771 2

LNCipedia: ACVR2B-AS1:2,

NONCODE: NONHSAT089073.2,

URS0000D5CC37_9606 lncRNA 9290 1

LNCipedia: ACVR2B-AS1:3,

ACVR2B-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ACVR2B-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ACVR2B-AS1 Gene

No ASD Table

Relevant External Links for ACVR2B-AS1 Gene

GeneLoc Exon Structure for
ACVR2B-AS1

Expression for ACVR2B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ACVR2B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ACVR2B-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x6.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ACVR2B-AS1

SOURCE GeneReport for Unigene cluster for ACVR2B-AS1 Gene:

Hs.570596
genes like me logo Genes that share expression patterns with ACVR2B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACVR2B-AS1 Gene

Orthologs for ACVR2B-AS1 Gene

Evolution for ACVR2B-AS1 Gene

ENSEMBL:
Gene Tree for ACVR2B-AS1 (if available)
TreeFam:
Gene Tree for ACVR2B-AS1 (if available)

No data available for Orthologs for ACVR2B-AS1 Gene

Paralogs for ACVR2B-AS1 Gene

No data available for Paralogs for ACVR2B-AS1 Gene

Variants for ACVR2B-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ACVR2B-AS1 Gene

SNP ID Clinical significance and condition Chr 03 pos Variation AA Info Type
901876 Uncertain Significance: Heterotaxy, visceral, 4, autosomal 38,454,302(-) C/T FIVE_PRIME_UTR_VARIANT
901877 Uncertain Significance: Heterotaxy, visceral, 4, autosomal 38,454,346(-) C/A SYNONYMOUS_VARIANT
901878 Uncertain Significance: Heterotaxy, visceral, 4, autosomal 38,454,367(-) G/A SYNONYMOUS_VARIANT
rs1559642966 Uncertain Significance: Heterotaxy, visceral, 4, autosomal 38,454,323(-) A/G INITIATIOR_CODON_VARIANT,MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for ACVR2B-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ACVR2B-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1073218 CNV deletion 25765185
nsv1144986 CNV deletion 24896259
nsv954465 CNV deletion 24416366

Additional Variant Information for ACVR2B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACVR2B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ACVR2B-AS1 Gene

Disorders for ACVR2B-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for ACVR2B-AS1 Gene - From: DISEASES and GeneCards

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ACVR2B-AS1

genes like me logo Genes that share disorders with ACVR2B-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ACVR2B-AS1 Gene

Publications for ACVR2B-AS1 Gene

  1. Investigation of the Clinical Significance and Prognostic Value of the lncRNA ACVR2B-As1 in Liver Cancer. (PMID: 31886217) Nie Y … Li W (BioMed research international 2019) 3

Products for ACVR2B-AS1 Gene

Sources for ACVR2B-AS1 Gene