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Aliases for ACTR3-AS1 Gene

Subcategory (RNA class) for ACTR3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ACTR3-AS1 Gene

  • ACTR3 Antisense RNA 1 2 3

External Ids for ACTR3-AS1 Gene

Summaries for ACTR3-AS1 Gene

GeneCards Summary for ACTR3-AS1 Gene

ACTR3-AS1 (ACTR3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ACTR3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACTR3-AS1 Gene

Genomics for ACTR3-AS1 Gene

GeneHancer (GH) Regulatory Elements for ACTR3-AS1 Gene

Promoters and enhancers for ACTR3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J113885 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 -1.5 -1480 13.1 ZNF652 CC2D1A ZFX SP1 ELF3 ZKSCAN8 CBFA2T2 ZNF148 NKRF POLR2A ACTR3 ACTR3-AS1 ENSG00000244063 SLC35F5 WASH2P LINC01191 RPL23AP7 DDX11L2 CBWD2 ENSG00000270019
GH02J113900 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 -10.2 -10238 0.6 SP1 HNF1A MLLT1 RXRA FOXA2 SOX13 JUND YY1 SAP130 HDGF ACTR3 ENSG00000279957 ACTR3-AS1
GH02J113876 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 +13.4 13387 3.3 ELF3 RERE NFIB ZSCAN21 TFE3 SP7 HNF1A PPARG SP5 ZNF644 ENSG00000228857 ENSG00000244063 ACTR3 SLC35F5 RPL23AP7 ACTR3-AS1 ENSG00000270019
GH02J113902 Promoter/Enhancer 1.2 Ensembl dbSUPER 0.4 -9.6 -9609 0.4 SP1 HNF1A RXRA FOXA2 SOX13 ZKSCAN8 JUND ZBTB25 SAP130 ZNF511 ACTR3 RPL23AP7 ENSG00000279957 ACTR3-AS1
GH02J113901 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -11.1 -11129 1 ZNF512 NBN ZNF507 HDGF CUX1 ENSG00000279957 CBWD2 ENSG00000244063 RPL23AP7 ACTR3 ACTR3-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ACTR3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ACTR3-AS1 Gene

Genomic Locations for ACTR3-AS1 Gene
chr2:113,831,183-113,890,992
(GRCh38/hg38)
Size:
59,810 bases
Orientation:
Minus strand

Genomic View for ACTR3-AS1 Gene

Genes around ACTR3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACTR3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACTR3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTR3-AS1 Gene

Proteins for ACTR3-AS1 Gene

Post-translational modifications for ACTR3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACTR3-AS1 Gene

Domains & Families for ACTR3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ACTR3-AS1 Gene

Function for ACTR3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACTR3-AS1 Gene

Localization for ACTR3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACTR3-AS1 Gene

Pathways & Interactions for ACTR3-AS1 Gene

PathCards logo

SuperPathways for ACTR3-AS1 Gene

No Data Available

Interacting Proteins for ACTR3-AS1 Gene

Gene Ontology (GO) - Biological Process for ACTR3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ACTR3-AS1 Gene

Drugs & Compounds for ACTR3-AS1 Gene

No Compound Related Data Available

Transcripts for ACTR3-AS1 Gene

mRNA/cDNA for ACTR3-AS1 Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ACTR3-AS1 Gene

No ASD Table

Relevant External Links for ACTR3-AS1 Gene

GeneLoc Exon Structure for
ACTR3-AS1
ECgene alternative splicing isoforms for
ACTR3-AS1

Expression for ACTR3-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACTR3-AS1 Gene

Orthologs for ACTR3-AS1 Gene

No data available for Orthologs and Evolution for ACTR3-AS1 Gene

Paralogs for ACTR3-AS1 Gene

No data available for Paralogs for ACTR3-AS1 Gene

Variants for ACTR3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ACTR3-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000026824 -- 113,858,465(-) G/C intron_variant
rs1000081268 -- 113,865,136(-) T/C intron_variant
rs1000155029 -- 113,866,776(-) C/T intron_variant
rs1000158682 -- 113,841,385(-) T/C intron_variant
rs1000172199 -- 113,832,857(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ACTR3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv829623 CNV loss 20364138

Additional Variant Information for ACTR3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACTR3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ACTR3-AS1 Gene

Disorders for ACTR3-AS1 Gene

Additional Disease Information for ACTR3-AS1

No disorders were found for ACTR3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACTR3-AS1 Gene

Publications for ACTR3-AS1 Gene

  1. Prospective Series of Nine Long Noncoding RNAs Associated with Survival of Patients with Glioblastoma. (PMID: 29959764) Lei B … Qi S (Journal of neurological surgery. Part A, Central European neurosurgery 2018) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for ACTR3-AS1 Gene

Sources for ACTR3-AS1 Gene

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