Aliases for ACTN1-AS1 Gene

Subcategory (RNA class) for ACTN1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ACTN1-AS1 Gene

  • ACTN1 Antisense RNA 1 2 3 5
  • ACTN1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ACTN1-AS1 2 168
  • Chromosome 14 Open Reading Frame 84 2
  • HSALNG0102131 167
  • NONHSAG015314 92
  • C14orf84 3

External Ids for ACTN1-AS1 Gene

Previous HGNC Symbols for ACTN1-AS1 Gene

  • C14orf84

Previous GeneCards Identifiers for ACTN1-AS1 Gene

  • GC14P069446

Summaries for ACTN1-AS1 Gene

GeneCards Summary for ACTN1-AS1 Gene

ACTN1-AS1 (ACTN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ACTN1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ACTN1-AS1 Gene

Genomics for ACTN1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ACTN1-AS1 Gene

Promoters and enhancers for ACTN1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J068973 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 508.8 -1.0 -991 9.8 ZNF217 ZSCAN5C POLR2G USF1 SP1 NCOR1 PHF8 FOS TEAD4 ZFX ACTN1-AS1 ACTN1 lnc-DCAF5-4 lnc-RAD51B-3
GH14J068961 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 9 -12.1 -12108 12 ZSCAN5C ZIC2 RFX1 REST KLF4 CTBP1 MXI1 POLR2A NR2F2 ESRRA EXD2 ACTN1-AS1 HMGN1P3 DCAF5 ACTN1 lnc-DCAF5-4 lnc-RAD51B-3
GH14J069012 Enhancer 1.2 FANTOM5 Ensembl ENCODE 5.7 +35.1 35102 9.2 HNRNPK ZNF10 TEAD1 OSR2 PCBP1 KDM1A FOXA2 CEBPB SP2 GATA3 DCAF5 ACTN1-AS1 RPS29P1
GH14J069004 Enhancer 1.2 FANTOM5 Ensembl ENCODE 5.7 +27.2 27233 5.1 ZNF300 JUND FOS TEAD4 ZIC2 MXI1 ZNF491 ZNF132 MYC FOXA2 SRSF5 ACTN1 EXD2 ACTN1-AS1 RPS29P1
GH14J069068 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 4.8 +95.3 95303 18.8 SP1 JUND RELA RCOR1 TRIM22 FOXA2 BCL11A TCF12 ZNF316 CBFB ACTN1 ACTN1-AS1 SRSF5 RF00017-1596 DDX18P1 lnc-EXD2-9 DCAF5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ACTN1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ACTN1-AS1 Gene

Genomic Locations for ACTN1-AS1 Gene
chr14:68,979,498-68,989,807
(GRCh38/hg38)
Size:
10,310 bases
Orientation:
Plus strand
chr14:69,446,399-69,454,180
(GRCh37/hg19)
Size:
7,782 bases
Orientation:
Plus strand

Genomic View for ACTN1-AS1 Gene

Genes around ACTN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACTN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACTN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTN1-AS1 Gene

Proteins for ACTN1-AS1 Gene

Post-translational modifications for ACTN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACTN1-AS1 Gene

Domains & Families for ACTN1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ACTN1-AS1 Gene

Function for ACTN1-AS1 Gene

Phenotypes From GWAS Catalog for ACTN1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACTN1-AS1 Gene

Localization for ACTN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACTN1-AS1 Gene

Pathways & Interactions for ACTN1-AS1 Gene

PathCards logo

SuperPathways for ACTN1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ACTN1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ACTN1-AS1 Gene

Drugs & Compounds for ACTN1-AS1 Gene

No Compound Related Data Available

Transcripts for ACTN1-AS1 Gene

mRNA/cDNA for ACTN1-AS1 Gene

13 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
8 LncBook transcripts :
12 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACTN1-AS1 Gene

No ASD Table

Relevant External Links for ACTN1-AS1 Gene

GeneLoc Exon Structure for
ACTN1-AS1

Expression for ACTN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ACTN1-AS1 Gene

SOURCE GeneReport for Unigene cluster for ACTN1-AS1 Gene:

Hs.603341
genes like me logo Genes that share expression patterns with ACTN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACTN1-AS1 Gene

Orthologs for ACTN1-AS1 Gene

Evolution for ACTN1-AS1 Gene

ENSEMBL:
Gene Tree for ACTN1-AS1 (if available)
TreeFam:
Gene Tree for ACTN1-AS1 (if available)

No data available for Orthologs for ACTN1-AS1 Gene

Paralogs for ACTN1-AS1 Gene

No data available for Paralogs for ACTN1-AS1 Gene

Variants for ACTN1-AS1 Gene

Additional dbSNP identifiers (rs#s) for ACTN1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ACTN1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv832823 CNV loss 17160897

Additional Variant Information for ACTN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACTN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ACTN1-AS1 Gene

Disorders for ACTN1-AS1 Gene

Additional Disease Information for ACTN1-AS1

No disorders were found for ACTN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACTN1-AS1 Gene

Publications for ACTN1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

Products for ACTN1-AS1 Gene

Sources for ACTN1-AS1 Gene