Aliases for ACTN1-AS1 Gene

Subcategory (RNA class) for ACTN1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ACTN1-AS1 Gene

  • ACTN1 Antisense RNA 1 2 3 5
  • ACTN1-AS1 2 5 165
  • ACTN1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 14 Open Reading Frame 84 2
  • NONHSAG015314.2 91
  • HSALNG0102131 164
  • C14orf84 3

External Ids for ACTN1-AS1 Gene

Previous HGNC Symbols for ACTN1-AS1 Gene

  • C14orf84

Previous GeneCards Identifiers for ACTN1-AS1 Gene

  • GC14P069446

Summaries for ACTN1-AS1 Gene

GeneCards Summary for ACTN1-AS1 Gene

ACTN1-AS1 (ACTN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ACTN1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ACTN1-AS1 Gene

Genomics for ACTN1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ACTN1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J068973 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 608.8 -1.0 -991 9.8 SP1 HNRNPL CREB1 GATAD2A ATF7 TEAD4 PRDM10 ZNF629 REST TFE3 ACTN1-AS1 ACTN1 lnc-DCAF5-4 lnc-RAD51B-3 ZFP36L1
GH14J068961 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 9 -12.1 -12108 12 GATAD2A ZNF629 RFX1 ZNF692 ZNF7 TARDBP ZIC2 PKNOX1 RXRB REST EXD2 ACTN1-AS1 HMGN1P3 DCAF5 ACTN1 lnc-DCAF5-4 lnc-RAD51B-3 ZFP36L1
GH14J069012 Enhancer 1.2 FANTOM5 Ensembl ENCODE 5.7 +35.1 35102 9.2 HNRNPL ZNF692 FOXA1 ZSCAN4 PATZ1 ZNF600 CEBPA SCRT2 SOX13 ZBTB44 ACTN1-AS1 RPS29P1 ACTN1 DCAF5
GH14J069004 Enhancer 1.2 FANTOM5 Ensembl ENCODE 5.7 +27.2 27233 5.1 TEAD4 PRDM10 JUND ZNF300 ZIC2 ZNF331 ZNF37A ZNF561 SCRT2 ZBTB44 SRSF5 ACTN1 EXD2 ACTN1-AS1 RPS29P1 DCAF5
GH14J069068 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 4.8 +95.3 95303 18.8 SP1 BACH1 STAT3 RELA IKZF2 RCOR1 TRIM22 PKNOX1 ATF7 EED ACTN1 ACTN1-AS1 SRSF5 RF00017-1596 DDX18P1 lnc-EXD2-9 DCAF5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ACTN1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ACTN1-AS1 Gene

Genomic Locations for ACTN1-AS1 Gene
chr14:68,979,498-68,989,807
(GRCh38/hg38)
Size:
10,310 bases
Orientation:
Plus strand
chr14:69,446,399-69,454,180
(GRCh37/hg19)
Size:
7,782 bases
Orientation:
Plus strand

Genomic View for ACTN1-AS1 Gene

Genes around ACTN1-AS1 on UCSC Golden Path with GeneCards custom track
ACTN1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ACTN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACTN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTN1-AS1 Gene

Proteins for ACTN1-AS1 Gene

Post-translational modifications for ACTN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACTN1-AS1 Gene

Domains & Families for ACTN1-AS1 Gene

Gene Families for ACTN1-AS1 Gene

genes like me logo Genes that share domains with ACTN1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ACTN1-AS1 Gene

Function for ACTN1-AS1 Gene

Phenotypes From GWAS Catalog for ACTN1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACTN1-AS1 Gene

Localization for ACTN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACTN1-AS1 Gene

Pathways & Interactions for ACTN1-AS1 Gene

PathCards logo

SuperPathways for ACTN1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACTN1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ACTN1-AS1 Gene

Drugs & Compounds for ACTN1-AS1 Gene

No Compound Related Data Available

Transcripts for ACTN1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ACTN1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001D1FF7_9606 lncRNA 599 6

HGNC: 20131,

RefSeq: NR_073422,

Ensembl: ENST00000553961 (view in UCSC) ,

LncBook: HSALNT0212588,

LNCipedia: ACTN1-AS1:1,

NONCODE: NONHSAT037504.2,

URS000076A479_9606 lncRNA 484 3

Ensembl: ENST00000553944 (view in UCSC) ,

LncBook: HSALNT0212593,

LNCipedia: ACTN1-AS1:4,

URS00008B26FD_9606 lncRNA 741 3

LncBook: HSALNT0212589,

LNCipedia: ACTN1-AS1:2,

NONCODE: NONHSAT037505.2,

URS0000D5786A_9606 lncRNA 6237 2

LncBook: HSALNT0212585,

LNCipedia: ACTN1-AS1:8,

URS0000D5D7AC_9606 lncRNA 722 2

LncBook: HSALNT0212587,

LNCipedia: ACTN1-AS1:12,

ACTN1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ACTN1-AS1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACTN1-AS1 Gene

No ASD Table

Relevant External Links for ACTN1-AS1 Gene

GeneLoc Exon Structure for
ACTN1-AS1

Expression for ACTN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ACTN1-AS1 Gene

SOURCE GeneReport for Unigene cluster for ACTN1-AS1 Gene:

Hs.603341
genes like me logo Genes that share expression patterns with ACTN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACTN1-AS1 Gene

Orthologs for ACTN1-AS1 Gene

Evolution for ACTN1-AS1 Gene

ENSEMBL:
Gene Tree for ACTN1-AS1 (if available)
TreeFam:
Gene Tree for ACTN1-AS1 (if available)

No data available for Orthologs for ACTN1-AS1 Gene

Paralogs for ACTN1-AS1 Gene

No data available for Paralogs for ACTN1-AS1 Gene

Variants for ACTN1-AS1 Gene

Additional dbSNP identifiers (rs#s) for ACTN1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ACTN1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv832823 CNV loss 17160897

Additional Variant Information for ACTN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACTN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ACTN1-AS1 Gene

Disorders for ACTN1-AS1 Gene

Additional Disease Information for ACTN1-AS1

No disorders were found for ACTN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACTN1-AS1 Gene

Publications for ACTN1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for ACTN1-AS1 Gene

Sources for ACTN1-AS1 Gene