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Aliases for ACTN1-AS1 Gene

Subcategory (RNA class) for ACTN1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ACTN1-AS1 Gene

  • ACTN1 Antisense RNA 1 2 3 5
  • ACTN1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 14 Open Reading Frame 84 2
  • C14orf84 3

External Ids for ACTN1-AS1 Gene

Previous HGNC Symbols for ACTN1-AS1 Gene

  • C14orf84

Previous GeneCards Identifiers for ACTN1-AS1 Gene

  • GC14P069446

Summaries for ACTN1-AS1 Gene

GeneCards Summary for ACTN1-AS1 Gene

ACTN1-AS1 (ACTN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ACTN1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACTN1-AS1 Gene

Genomics for ACTN1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ACTN1-AS1 Gene

Promoters and enhancers for ACTN1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I068973 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 558.9 -1.2 -1175 9.8 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZBTB7B YY1 FOS SP3 ACTN1-AS1 ACTN1 DCAF5 SUSD6 DDX18P1 SRSF5 GC14P068937
GH14I068961 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 9 -12.3 -12292 12 PKNOX1 FOXA2 NFIB ARID4B ZNF76 GLI4 BMI1 ZNF48 RFX5 YY1 EXD2 ACTN1-AS1 HMGN1P3 DCAF5 ACTN1 GC14P068937
GH14I069013 Enhancer 1.3 FANTOM5 Ensembl ENCODE 5.6 +34.7 34718 1.6 ELF3 FOXA2 ARID4B ZNF335 EGR1 SCRT2 RCOR1 EGR2 SP5 CEBPB ACTN1-AS1 RPS29P1
GH14I069092 Enhancer 1.2 Ensembl ENCODE dbSUPER 4.6 +115.0 114993 3.4 ELF3 FOXA2 MLX ARID4B DMAP1 SLC30A9 TCF12 HMG20B JUNB MIER2 ACTN1 ACTN1-AS1 DDX18P1 GC14M069144 ENSG00000206768 DCAF5
GH14I069004 Enhancer 1.2 FANTOM5 Ensembl ENCODE 4.4 +25.9 25949 1.9 ELF3 TFAP4 FOXA2 SAP130 JUN ZFP64 MAX SIN3A ZIC2 FOSL1 ACTN1-AS1 RPS29P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ACTN1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ACTN1-AS1 Gene

Genomic Locations for ACTN1-AS1 Gene
chr14:68,979,682-68,987,463
(GRCh38/hg38)
Size:
7,782 bases
Orientation:
Plus strand
chr14:69,446,399-69,454,180
(GRCh37/hg19)

Genomic View for ACTN1-AS1 Gene

Genes around ACTN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACTN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACTN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTN1-AS1 Gene

Proteins for ACTN1-AS1 Gene

Post-translational modifications for ACTN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACTN1-AS1 Gene

Domains & Families for ACTN1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ACTN1-AS1 Gene

Function for ACTN1-AS1 Gene

Phenotypes From GWAS Catalog for ACTN1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACTN1-AS1 Gene

Localization for ACTN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACTN1-AS1 Gene

Pathways & Interactions for ACTN1-AS1 Gene

SuperPathways for ACTN1-AS1 Gene

No Data Available

Interacting Proteins for ACTN1-AS1 Gene

Gene Ontology (GO) - Biological Process for ACTN1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ACTN1-AS1 Gene

Drugs & Compounds for ACTN1-AS1 Gene

No Compound Related Data Available

Transcripts for ACTN1-AS1 Gene

mRNA/cDNA for ACTN1-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ACTN1-AS1 Gene

ACTN1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACTN1-AS1 Gene

No ASD Table

Relevant External Links for ACTN1-AS1 Gene

GeneLoc Exon Structure for
ACTN1-AS1
ECgene alternative splicing isoforms for
ACTN1-AS1

Expression for ACTN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ACTN1-AS1 Gene

SOURCE GeneReport for Unigene cluster for ACTN1-AS1 Gene:

Hs.603341
genes like me logo Genes that share expression patterns with ACTN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACTN1-AS1 Gene

Orthologs for ACTN1-AS1 Gene

Evolution for ACTN1-AS1 Gene

ENSEMBL:
Gene Tree for ACTN1-AS1 (if available)
TreeFam:
Gene Tree for ACTN1-AS1 (if available)

No data available for Orthologs for ACTN1-AS1 Gene

Paralogs for ACTN1-AS1 Gene

No data available for Paralogs for ACTN1-AS1 Gene

Variants for ACTN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ACTN1-AS1 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs387907346 pathogenic, Platelet-type bleeding disorder 15 68,978,963(+) G/T upstream_transcript_variant
rs1000021213 -- 68,986,681(+) G/A intron_variant
rs1000663101 -- 68,983,312(+) A/C intron_variant
rs1000818346 -- 68,982,882(+) C/T intron_variant
rs1000912255 -- 68,979,599(+) T/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ACTN1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv832823 CNV loss 17160897

Additional Variant Information for ACTN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACTN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ACTN1-AS1 Gene

Disorders for ACTN1-AS1 Gene

Additional Disease Information for ACTN1-AS1

No disorders were found for ACTN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACTN1-AS1 Gene

Publications for ACTN1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for ACTN1-AS1 Gene

Sources for ACTN1-AS1 Gene

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