Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ACTG1P20 Gene

Aliases for ACTG1P20 Gene

  • Actin Gamma 1 Pseudogene 20 2 3 5
  • Actin, Gamma 1 Pseudogene 3
  • Actin, Beta Pseudogene 3

External Ids for ACTG1P20 Gene

Summaries for ACTG1P20 Gene

GeneCards Summary for ACTG1P20 Gene

ACTG1P20 (Actin Gamma 1 Pseudogene 20) is a Pseudogene.

Additional gene information for ACTG1P20 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACTG1P20 Gene

Genomics for ACTG1P20 Gene

GeneHancer (GH) Regulatory Elements for ACTG1P20 Gene

Promoters and enhancers for ACTG1P20 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J027321 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 662.6 -1.2 -1223 2.2 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC ACTG1P20 TMEM222 FAM76A LOC101928324 PPP1R8 ARID1A EYA3 GPN2 HMGN2 SYTL1
GH01J027487 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 115.8 +166.8 166822 5.8 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 MCM3 WASF2 ARID1A ACTG1P20 GPN2 FAM76A PHACTR4 NPM1P39 MAP3K6 PPP1R8 ENSG00000231344
GH01J026618 Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 103.6 -703.5 -703478 4 CLOCK FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 ARID1A HMGN2 ACTG1P20 GPN2 LOC101928324 GPATCH3 AHDC1 RPL17P9 NPM1P39 ZNF593
GH01J027151 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 85.1 -169.8 -169828 4.8 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 SP3 NFYC SLC9A1 ARID1A ACTG1P20 FAM76A HMGN2 GPN2 LOC101928324 EYA3 LOC101928728 PPP1R8
GH01J026691 Promoter/Enhancer 3.3 UCNEbase EPDnew FANTOM5 Ensembl ENCODE dbSUPER 53.9 -626.8 -626816 12.9 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 ARID1A LOC101928728 HMGN2 ACTG1P20 LOC101928324 PIGV GPN2 GPATCH3 TMEM222 RPL17P9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ACTG1P20 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ACTG1P20 Gene

Genomic Locations for ACTG1P20 Gene
chr1:27,323,874-27,326,525
(GRCh38/hg38)
Size:
2,652 bases
Orientation:
Plus strand
chr1:27,650,365-27,653,016
(GRCh37/hg19)
Size:
2,652 bases
Orientation:
Plus strand

Genomic View for ACTG1P20 Gene

Genes around ACTG1P20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACTG1P20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACTG1P20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTG1P20 Gene

Function for ACTG1P20 Gene

Phenotypes From GWAS Catalog for ACTG1P20 Gene

Phenotypes for ACTG1P20 Gene

genes like me logo Genes that share phenotypes with ACTG1P20: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACTG1P20 Gene

Localization for ACTG1P20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACTG1P20 Gene

Pathways & Interactions for ACTG1P20 Gene

SuperPathways for ACTG1P20 Gene

No Data Available

Interacting Proteins for ACTG1P20 Gene

Gene Ontology (GO) - Biological Process for ACTG1P20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ACTG1P20 Gene

Drugs & Compounds for ACTG1P20 Gene

No Compound Related Data Available

Transcripts for ACTG1P20 Gene

mRNA/cDNA for ACTG1P20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ACTG1P20 Gene

No ASD Table

Relevant External Links for ACTG1P20 Gene

GeneLoc Exon Structure for
ACTG1P20
ECgene alternative splicing isoforms for
ACTG1P20

Expression for ACTG1P20 Gene

NURSA nuclear receptor signaling pathways regulating expression of ACTG1P20 Gene:

ACTG1P20
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACTG1P20 Gene

Orthologs for ACTG1P20 Gene

Evolution for ACTG1P20 Gene

ENSEMBL:
Gene Tree for ACTG1P20 (if available)
TreeFam:
Gene Tree for ACTG1P20 (if available)

No data available for Orthologs for ACTG1P20 Gene

Paralogs for ACTG1P20 Gene

No data available for Paralogs for ACTG1P20 Gene

Variants for ACTG1P20 Gene

Sequence variations from dbSNP and Humsavar for ACTG1P20 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1001073219 -- 27,322,724(+) T/G upstream_transcript_variant
rs1001334177 -- 27,323,859(+) T/C upstream_transcript_variant
rs1001397809 -- 27,325,109(+) G/T non_coding_transcript_variant
rs1001495617 -- 27,326,726(+) A/T downstream_transcript_variant
rs1002506637 -- 27,325,490(+) C/G non_coding_transcript_variant

Additional Variant Information for ACTG1P20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACTG1P20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ACTG1P20 Gene

Disorders for ACTG1P20 Gene

Additional Disease Information for ACTG1P20

No disorders were found for ACTG1P20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACTG1P20 Gene

Publications for ACTG1P20 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for ACTG1P20 Gene

Sources for ACTG1P20 Gene

Content
Loading form....