Aliases for ACTG1P17 Gene

Aliases for ACTG1P17 Gene

  • Actin Gamma 1 Pseudogene 17 2 3 5
  • Actin, Alpha 2, Smooth Muscle, Aorta Pseudogene 3

External Ids for ACTG1P17 Gene

Summaries for ACTG1P17 Gene

GeneCards Summary for ACTG1P17 Gene

ACTG1P17 (Actin Gamma 1 Pseudogene 17) is a Pseudogene.

Additional gene information for ACTG1P17 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ACTG1P17 Gene

Genomics for ACTG1P17 Gene

GeneHancer (GH) Regulatory Elements for ACTG1P17 Gene

Promoters and enhancers for ACTG1P17 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J082738 Enhancer 0.7 Ensembl 750.6 +1.2 1179 1.6 L3MBTL2 TEAD4 SMARCA4 IKZF1 RFX1 ZNF316 NFE2 SCRT2 ZNF766 MAFG ACTG1P17 ENSG00000279758 lnc-FSD2-2 lnc-WHAMM-5 SAXO2 RAMAC RF00017-1870
GH15J083561 Enhancer 0.6 dbSUPER 5.1 -825.3 -825328 7.9 ZBTB40 CTCF CTBP1 RAD21 ZSCAN4 SMC3 NFIC GATAD2B CUX1 ZFHX2 ADAMTSL3 HOMER2 GOLGA6L5P ACTG1P17 RN7SL331P UBE2Q2L GOLGA2P7 NONHSAG017696.2 piR-45012-210 SH3GL3
GH15J083538 Enhancer 0.7 Ensembl dbSUPER 4.4 -799.0 -799021 0.4 MAFK NFE2L2 ZNF316 NFE2 MAFG EMSY ACTG1P17 NONHSAG017696.2 piR-45012-210 SH3GL3
GH15J083570 Enhancer 0.5 dbSUPER 5.1 -833.5 -833532 5.8 CTCF NR2F1 RAD21 CEBPA ZNF24 SCRT2 USF1 SMC3 NR2F6 ADAMTSL3 ENSG00000259683 ACTG1P17 GOLGA6L5P GOLGA2P7 UBE2Q2L UBE2Q2P1 NONHSAG017696.2 piR-45012-210 SH3GL3
GH15J083582 Enhancer 0.2 Ensembl 5.1 -842.6 -842642 0.8 ACTG1P17 NONHSAG017696.2 piR-45012-210 SH3GL3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ACTG1P17 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ACTG1P17 Gene

Genomic Locations for ACTG1P17 Gene
chr15:82,725,873-82,739,780
(GRCh38/hg38)
Size:
13,908 bases
Orientation:
Minus strand
chr15:83,394,625-83,408,532
(GRCh37/hg19)
Size:
13,908 bases
Orientation:
Minus strand

Genomic View for ACTG1P17 Gene

Genes around ACTG1P17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACTG1P17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACTG1P17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTG1P17 Gene

Proteins for ACTG1P17 Gene

Post-translational modifications for ACTG1P17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACTG1P17 Gene

Domains & Families for ACTG1P17 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ACTG1P17 Gene

Function for ACTG1P17 Gene

Phenotypes From GWAS Catalog for ACTG1P17 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACTG1P17 Gene

Localization for ACTG1P17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACTG1P17 Gene

Pathways & Interactions for ACTG1P17 Gene

PathCards logo

SuperPathways for ACTG1P17 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACTG1P17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ACTG1P17 Gene

Drugs & Compounds for ACTG1P17 Gene

No Compound Related Data Available

Transcripts for ACTG1P17 Gene

mRNA/cDNA for ACTG1P17 Gene

(2) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACTG1P17 Gene

No ASD Table

Relevant External Links for ACTG1P17 Gene

GeneLoc Exon Structure for
ACTG1P17
ECgene alternative splicing isoforms for
ACTG1P17

Expression for ACTG1P17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ACTG1P17 Gene

NURSA nuclear receptor signaling pathways regulating expression of ACTG1P17 Gene:

ACTG1P17
genes like me logo Genes that share expression patterns with ACTG1P17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACTG1P17 Gene

Orthologs for ACTG1P17 Gene

Evolution for ACTG1P17 Gene

ENSEMBL:
Gene Tree for ACTG1P17 (if available)
TreeFam:
Gene Tree for ACTG1P17 (if available)

No data available for Orthologs for ACTG1P17 Gene

Paralogs for ACTG1P17 Gene

No data available for Paralogs for ACTG1P17 Gene

Variants for ACTG1P17 Gene

Sequence variations from dbSNP and Humsavar for ACTG1P17 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000022938 -- 82,729,426(-) G/A/T intron_variant
rs1000258466 -- 82,736,012(-) A/T intron_variant
rs1000321589 -- 82,727,610(-) G/A intron_variant
rs1000396021 -- 82,733,173(-) G/A/C/T intron_variant
rs1000398449 -- 82,740,557(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ACTG1P17 Gene

Variant ID Type Subtype PubMed ID
dgv2637n100 CNV gain 25217958
esv2674021 CNV deletion 23128226
esv34318 CNV loss 17911159
esv3581790 CNV loss 25503493
esv3637058 CNV gain 21293372
nsv1120052 OTHER inversion 24896259
nsv817702 CNV loss 17921354

Additional Variant Information for ACTG1P17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACTG1P17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ACTG1P17 Gene

Disorders for ACTG1P17 Gene

Additional Disease Information for ACTG1P17

No disorders were found for ACTG1P17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACTG1P17 Gene

Publications for ACTG1P17 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for ACTG1P17 Gene

Sources for ACTG1P17 Gene