Aliases for ACTE1P Gene

Subcategory (RNA class) for ACTE1P Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ACTE1P Gene

  • Actin Epsilon 1, Pseudogene 2 3
  • Novel Actin Domain Containing Pseudogene 5
  • NONHSAG008936.2 91
  • HSALNG0085469 164
  • Lnc-DHCR7-3 165
  • AP002387.1 5

External Ids for ACTE1P Gene

Summaries for ACTE1P Gene

GeneCards Summary for ACTE1P Gene

ACTE1P (Actin Epsilon 1, Pseudogene) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ACTE1P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ACTE1P Gene

Genomics for ACTE1P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ACTE1P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J071422 Enhancer 0.3 Ensembl 600.7 -0.2 -177 0.8 SPI1 ACTE1P NADSYN1 ENSG00000254682 DHCR7 RF00017-973 SHANK2
GH11J071418 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 +4.7 4740 1.4 TCF12 IKZF2 PKNOX1 EED DPF2 RUNX3 GATAD2B BCL11A IKZF1 NR2F1 NADSYN1 ENSG00000254682 DHCR7 ACTE1P HSALNG0085468 SHANK2
GH11J071420 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 +2.7 2747 0.6 CTCF IKZF1 ZNF143 REST RAD21 IRF2 IKZF2 TRIM22 SMC3 GATA3 KRTAP5-8 ACTE1P HSALNG0085468 DHCR7 SHANK2
GH11J071426 Enhancer 0.5 Ensembl 0.7 -3.0 -2978 0.4 ZHX2 ZNF217 SIN3A EBF1 MNT ZNF579 FOSL2 NADSYN1 ENSG00000254682 DHCR7 ACTE1P RF00017-973 SHANK2
GH11J071428 Enhancer 0.7 Ensembl ENCODE 0.4 -6.1 -6089 1.9 ZNF7 FOXA2 HNF4A RXRA RARA ARID4B FOXA1 FOXA3 RF00017-973 NADSYN1 DHCR7 ENSG00000254682 ACTE1P SHANK2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ACTE1P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ACTE1P Gene

Genomic Locations for ACTE1P Gene
chr11:71,382,601-71,423,423
(GRCh38/hg38)
Size:
40,823 bases
Orientation:
Minus strand
chr11:71,093,647-71,134,469
(GRCh37/hg19)
Size:
40,823 bases
Orientation:
Minus strand

Genomic View for ACTE1P Gene

Genes around ACTE1P on UCSC Golden Path with GeneCards custom track
ACTE1P in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ACTE1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACTE1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTE1P Gene

Proteins for ACTE1P Gene

Post-translational modifications for ACTE1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACTE1P Gene

Domains & Families for ACTE1P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ACTE1P Gene

Function for ACTE1P Gene

Phenotypes From GWAS Catalog for ACTE1P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACTE1P Gene

Localization for ACTE1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACTE1P Gene

Pathways & Interactions for ACTE1P Gene

PathCards logo

SuperPathways for ACTE1P Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACTE1P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ACTE1P Gene

Drugs & Compounds for ACTE1P Gene

No Compound Related Data Available

Transcripts for ACTE1P Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ACTE1P Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D58F_9606 lncRNA 2162 3

RefSeq: NR_038862,

LNCipedia: lnc-DHCR7-3:2,

NONCODE: NONHSAT022676.2,

URS00008B3AB7_9606 lncRNA 460 3

LncBook: HSALNT0177835,

LNCipedia: lnc-DHCR7-3:1,

NONCODE: NONHSAT022677.2,

ACTE1P in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ACTE1P Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ACTE1P Gene

No ASD Table

Relevant External Links for ACTE1P Gene

GeneLoc Exon Structure for
ACTE1P

Expression for ACTE1P Gene

SOURCE GeneReport for Unigene cluster for ACTE1P Gene:

Hs.128191
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACTE1P Gene

Orthologs for ACTE1P Gene

Evolution for ACTE1P Gene

ENSEMBL:
Gene Tree for ACTE1P (if available)
TreeFam:
Gene Tree for ACTE1P (if available)

No data available for Orthologs for ACTE1P Gene

Paralogs for ACTE1P Gene

No data available for Paralogs for ACTE1P Gene

Variants for ACTE1P Gene

Additional dbSNP identifiers (rs#s) for ACTE1P Gene

Additional Variant Information for ACTE1P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACTE1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ACTE1P Gene

Disorders for ACTE1P Gene

No disorders were found for ACTE1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ACTE1P Gene

Publications for ACTE1P Gene

No publications were found for ACTE1P Gene.

No data available for Mastermind for ACTE1P Gene

Products for ACTE1P Gene

Sources for ACTE1P Gene