Aliases for ACTBP9 Gene

Aliases for ACTBP9 Gene

  • ACTB Pseudogene 9 2 3 5
  • Actin, Beta Pseudogene 9 2 3
  • ACTBP9 5

External Ids for ACTBP9 Gene

Previous GeneCards Identifiers for ACTBP9 Gene

  • GC18U990002
  • GC18P060109

Summaries for ACTBP9 Gene

GeneCards Summary for ACTBP9 Gene

ACTBP9 (ACTB Pseudogene 9) is a Pseudogene.

Additional gene information for ACTBP9 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ACTBP9 Gene

Genomics for ACTBP9 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ACTBP9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J062450 Enhancer 1.3 FANTOM5 ENCODE 0.4 +9.8 9753 3.2 HNRNPL GATAD2A PRDM10 REST TFE3 LEF1 SOX13 IKZF1 NFKBIZ ZNF692 ENSG00000267560 ZCCHC2 RELCH ACTBP9 lnc-ZCCHC2-3 TNFRSF11A NONHSAG024039.2
GH18J062436 Enhancer 0.7 ENCODE 0.7 -4.0 -4024 2.5 ZNF692 PKNOX1 SP1 CEBPB TCF7 FOXA2 E2F1 YY1 SMARCB1 JUND ZCCHC2 ACTBP9 ENSG00000267487 lnc-TNFRSF11A-2 TNFRSF11A NONHSAG024039.2
GH18J062425 Promoter/Enhancer 1.3 ENCODE CraniofacialAtlas 0.4 -16.2 -16185 1.4 GATAD2A CTCF ZNF629 REST ZNF692 RCOR2 JUND FOXA1 PRDM1 ZNF143 ENSG00000267487 lnc-TNFRSF11A-2 ACTBP9 ZCCHC2 TNFRSF11A NONHSAG024039.2
GH18J062445 Enhancer 0.6 Ensembl 0.7 +3.7 3677 1.6 ZNF629 ZIC2 PKNOX1 OSR2 WT1 ZNF843 FEZF1 PRDM6 ZNF398 ZNF24 ZCCHC2 ACTBP9 lnc-ZCCHC2-3 TNFRSF11A NONHSAG024039.2
GH18J062458 Enhancer 1.1 Ensembl ENCODE 0.4 +18.4 18377 4.6 GATAD2A CTCF TEAD4 REST TFE3 SOX13 NFKBIZ RCOR2 ZNF7 RXRB ZCCHC2 lnc-ZCCHC2-3 ACTBP9 TNFRSF11A NONHSAG024039.2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ACTBP9 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ACTBP9 Gene

Genomic Locations for ACTBP9 Gene
chr18:62,441,924-62,443,715
(GRCh38/hg38)
Size:
1,792 bases
Orientation:
Plus strand
chr18:60,109,157-60,110,948
(GRCh37/hg19)
Size:
1,792 bases
Orientation:
Plus strand

Genomic View for ACTBP9 Gene

Genes around ACTBP9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACTBP9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACTBP9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTBP9 Gene

Proteins for ACTBP9 Gene

Post-translational modifications for ACTBP9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACTBP9 Gene

Domains & Families for ACTBP9 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ACTBP9 Gene

Function for ACTBP9 Gene

Molecular function for ACTBP9 Gene

GENATLAS Biochemistry:
actin,beta,pseudogene 9

Phenotypes From GWAS Catalog for ACTBP9 Gene

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACTBP9 Gene

Localization for ACTBP9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACTBP9 Gene

Pathways & Interactions for ACTBP9 Gene

PathCards logo

SuperPathways for ACTBP9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACTBP9 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ACTBP9 Gene

Drugs & Compounds for ACTBP9 Gene

No Compound Related Data Available

Transcripts for ACTBP9 Gene

mRNA/cDNA for ACTBP9 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ACTBP9 Gene

No ASD Table

Relevant External Links for ACTBP9 Gene

GeneLoc Exon Structure for
ACTBP9

Expression for ACTBP9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ACTBP9 Gene

mRNA differential expression in normal tissues according to GTEx for ACTBP9 Gene

This gene is overexpressed in Liver (x38.9) and Colon - Transverse (x5.9).
genes like me logo Genes that share expression patterns with ACTBP9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACTBP9 Gene

Orthologs for ACTBP9 Gene

Evolution for ACTBP9 Gene

ENSEMBL:
Gene Tree for ACTBP9 (if available)
TreeFam:
Gene Tree for ACTBP9 (if available)

No data available for Orthologs for ACTBP9 Gene

Paralogs for ACTBP9 Gene

No data available for Paralogs for ACTBP9 Gene

Variants for ACTBP9 Gene

Additional Variant Information for ACTBP9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACTBP9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ACTBP9 Gene

Disorders for ACTBP9 Gene

No disorders were found for ACTBP9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ACTBP9 Gene

Publications for ACTBP9 Gene

  1. FISH localization of human cytoplasmic actin genes ACTB to 7p22 and ACTG1 to 17q25 and characterization of related pseudogenes. (PMID: 8941379) Ueyama H … Miwa T (Cytogenetics and cell genetics 1996) 2 3

Products for ACTBP9 Gene

Sources for ACTBP9 Gene