Aliases for ACSL3-AS1 Gene

Data sources for ACSL3-AS1 Gene:

Subcategory (RNA class) for ACSL3-AS1 Gene

lncRNA

Aliases for ACSL3-AS1 Gene

External Ids for ACSL3-AS1 Gene

Summaries for ACSL3-AS1 Gene

GeneCards Summary for ACSL3-AS1 Gene

ACSL3-AS1 (ACSL3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ACSL3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ACSL3-AS1 Gene

Genomics for ACSL3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ACSL3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J222919 Enhancer 1 Ensembl ENCODE 250.7 -0.2 -231 2.2 MNT IKZF1 ARNT RBM22 JUND FOSL1 ATF1 SMARCA4 HDAC2 ZNF318 ACSL3-AS1 ACSL3 HSALNG0022557 KCNE4
GH02J222859 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 10.3 +57.5 57513 5.6 ZSCAN16 CHD2 TBP SP1 MXD4 FEZF1 CEBPA MNT IKZF1 SMAD5 ACSL3 ACSL3-AS1 lnc-KCNE4-1 KCNE4
GH02J223050 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.1 -134.8 -134810 7.6 NFATC3 TAL1 RXRA ZFP91 ZNF316 JUND PRDM10 EHMT2 ZBTB33 TCF12 HSALNG0022569 ACSL3-AS1 ACSL3 KCNE4 MRPL44 SCG2
GH02J222842 Promoter/Enhancer 1.4 EPDnew ENCODE CraniofacialAtlas 10.4 +77.0 76989 1.2 CEBPA FOXA1 HOMEZ KDM6A CEBPB FOXA2 SMAD4 SAP130 EP300 RXRA HSALNG0022551 ACSL3 ACSL3-AS1 piR-30091-104 MOGAT1
GH02J222707 Enhancer 1.2 ENCODE CraniofacialAtlas 11 +210.9 210928 3.3 MXD4 CEBPA MNT IKZF1 MBD2 CTCF BHLHE40 NONO ZIC2 HOMEZ ACSL3 MOGAT1 ACSL3-AS1 FARSB RPL31P17 lnc-MOGAT1-2 ENSG00000203531 lnc-FARSB-5 HSALNG0022539
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ACSL3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ACSL3-AS1 Gene

Latest Assembly
chr2:222,917,339-222,919,692
(GRCh38/hg38)
Size:
2,354 bases
Orientation:
Minus strand

Previous Assembly
chr2:223,782,105-223,784,081
(GRCh37/hg19 by Ensembl)
Size:
1,977 bases
Orientation:
Minus strand

Genomic View for ACSL3-AS1 Gene

Genes around ACSL3-AS1 on UCSC Golden Path with GeneCards custom track
ACSL3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ACSL3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACSL3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACSL3-AS1 Gene

Proteins for ACSL3-AS1 Gene

Post-translational modifications for ACSL3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACSL3-AS1 Gene

Domains & Families for ACSL3-AS1 Gene

Gene Families for ACSL3-AS1 Gene

genes like me logo Genes that share domains with ACSL3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ACSL3-AS1 Gene

Function for ACSL3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACSL3-AS1 Gene

Localization for ACSL3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACSL3-AS1 Gene

Pathways & Interactions for ACSL3-AS1 Gene

PathCards logo

SuperPathways for ACSL3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACSL3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ACSL3-AS1 Gene

Drugs & Compounds for ACSL3-AS1 Gene

No Compound Related Data Available

Transcripts for ACSL3-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ACSL3-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004BAD9B_9606 lncRNA 537 4

Ensembl: ENST00000446709 (view in UCSC) ,

LncBook: HSALNT0047832,

LNCipedia: lnc-FARSB-2:1,

NONCODE: NONHSAT077137.2,

URS00009AD3CF_9606 lncRNA 537 2

LncBook: HSALNT0047833,

NONCODE: NONHSAT186346.1,

URS0001BDF21D_9606 lncRNA 537 1

LncBook: HSALNT0047833,

URS0001BE72A9_9606 lncRNA 537 1

LncBook: HSALNT0047832,

ACSL3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ACSL3-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ACSL3-AS1 Gene

No ASD Table

Relevant External Links for ACSL3-AS1 Gene

GeneLoc Exon Structure for
ACSL3-AS1

Expression for ACSL3-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACSL3-AS1 Gene

Orthologs for ACSL3-AS1 Gene

Evolution for ACSL3-AS1 Gene

ENSEMBL:
Gene Tree for ACSL3-AS1 (if available)
TreeFam:
Gene Tree for ACSL3-AS1 (if available)

No data available for Orthologs for ACSL3-AS1 Gene

Paralogs for ACSL3-AS1 Gene

No data available for Paralogs for ACSL3-AS1 Gene

Variants for ACSL3-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ACSL3-AS1 Gene

SNP ID Clinical significance and condition Chr 02 pos Variation AA Info Type
rs144556995 Likely Benign: not provided 222,919,191(-) A/G
NM_004457.5(ACSL3):c.794A>G (p.Lys265Arg)
MISSENSE

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ACSL3-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for ACSL3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACSL3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ACSL3-AS1 Gene

Disorders for ACSL3-AS1 Gene

No disorders were found for ACSL3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ACSL3-AS1 Gene

Publications for ACSL3-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for ACSL3-AS1 Gene

Products for ACSL3-AS1 Gene

Sources for ACSL3-AS1 Gene