Aliases for ACSL3-AS1 Gene

Subcategory (RNA class) for ACSL3-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ACSL3-AS1 Gene

  • ACSL3 Antisense RNA 1 2 3 5
  • ACSL3-AS1 2 5
  • NONHSAG030643.2 91
  • HSALNG0022557 164
  • Lnc-FARSB-2 165

External Ids for ACSL3-AS1 Gene

Summaries for ACSL3-AS1 Gene

GeneCards Summary for ACSL3-AS1 Gene

ACSL3-AS1 (ACSL3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ACSL3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ACSL3-AS1 Gene

Genomics for ACSL3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ACSL3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J222919 Enhancer 1 Ensembl ENCODE 600.7 -0.1 -131 2.4 ZNF629 IKZF1 ZNF7 JUND PRDM1 PHB2 PKNOX1 BRD9 ZNF24 DPF2 ACSL3-AS1 ACSL3 lnc-KCNE4-7 KCNE4
GH02J222918 Enhancer 0.3 Ensembl 600.7 +1.6 1591 0.2 RBM22 ACSL3-AS1 ATG12P2 ACSL3 KCNE4
GH02J222859 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 10.3 +57.5 57513 5.6 SP1 GATAD2A TEAD4 ZNF629 TFE3 SOX13 IKZF1 NFKBIZ CTCF ZNF692 ACSL3 ACSL3-AS1 lnc-KCNE4-1 KCNE4
GH02J223050 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.1 -134.8 -134810 7.6 RFX1 JUND PKNOX1 NR2C1 EP300 SCRT2 HMBOX1 CEBPB BMI1 ZNF316 ACSL3-AS1 ACSL3 KCNE4 MRPL44 piR-56341-126 SCG2
GH02J222842 Promoter/Enhancer 1.4 EPDnew ENCODE CraniofacialAtlas 10.4 +77.0 76989 1.2 GATAD2A TFE3 SOX13 NFKBIZ RCOR2 FOXA1 RXRB IRF2 SP1 GABPA HSALNG0022551 ACSL3 ACSL3-AS1 piR-30091-104 MOGAT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ACSL3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ACSL3-AS1 Gene

Genomic Locations for ACSL3-AS1 Gene
chr2:222,917,339-222,919,692
(GRCh38/hg38)
Size:
2,354 bases
Orientation:
Minus strand
chr2:223,782,105-223,784,081
(GRCh37/hg19)
Size:
1,977 bases
Orientation:
Minus strand

Genomic View for ACSL3-AS1 Gene

Genes around ACSL3-AS1 on UCSC Golden Path with GeneCards custom track
ACSL3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ACSL3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACSL3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACSL3-AS1 Gene

Proteins for ACSL3-AS1 Gene

Post-translational modifications for ACSL3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACSL3-AS1 Gene

Domains & Families for ACSL3-AS1 Gene

Gene Families for ACSL3-AS1 Gene

genes like me logo Genes that share domains with ACSL3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ACSL3-AS1 Gene

Function for ACSL3-AS1 Gene

Phenotypes From GWAS Catalog for ACSL3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACSL3-AS1 Gene

Localization for ACSL3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACSL3-AS1 Gene

Pathways & Interactions for ACSL3-AS1 Gene

PathCards logo

SuperPathways for ACSL3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACSL3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ACSL3-AS1 Gene

Drugs & Compounds for ACSL3-AS1 Gene

No Compound Related Data Available

Transcripts for ACSL3-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ACSL3-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004BAD9B_9606 lncRNA 537 5

HGNC: 40227,

Ensembl: ENST00000446709 (view in UCSC) ,

LncBook: HSALNT0047832,

LNCipedia: lnc-FARSB-2:1,

NONCODE: NONHSAT077137.2,

URS00009AD3CF_9606 lncRNA 537 2

LncBook: HSALNT0047833,

NONCODE: NONHSAT186346.1,

ACSL3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ACSL3-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ACSL3-AS1 Gene

No ASD Table

Relevant External Links for ACSL3-AS1 Gene

GeneLoc Exon Structure for
ACSL3-AS1

Expression for ACSL3-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACSL3-AS1 Gene

Orthologs for ACSL3-AS1 Gene

Evolution for ACSL3-AS1 Gene

ENSEMBL:
Gene Tree for ACSL3-AS1 (if available)
TreeFam:
Gene Tree for ACSL3-AS1 (if available)

No data available for Orthologs for ACSL3-AS1 Gene

Paralogs for ACSL3-AS1 Gene

No data available for Paralogs for ACSL3-AS1 Gene

Variants for ACSL3-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ACSL3-AS1 Gene

SNP ID Clinical significance and condition Chr 02 pos Variation AA Info Type
724724 Likely Benign: not provided 222,919,191(-) A/G MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for ACSL3-AS1 Gene

Additional Variant Information for ACSL3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACSL3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ACSL3-AS1 Gene

Disorders for ACSL3-AS1 Gene

No disorders were found for ACSL3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ACSL3-AS1 Gene

Publications for ACSL3-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for ACSL3-AS1 Gene

Products for ACSL3-AS1 Gene

Sources for ACSL3-AS1 Gene