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Aliases for ACOXL-AS1 Gene

Subcategory (RNA class) for ACOXL-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ACOXL-AS1 Gene

  • ACOXL Antisense RNA 1 2 3 5

External Ids for ACOXL-AS1 Gene

Summaries for ACOXL-AS1 Gene

GeneCards Summary for ACOXL-AS1 Gene

ACOXL-AS1 (ACOXL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ACOXL-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACOXL-AS1 Gene

Genomics for ACOXL-AS1 Gene

GeneHancer (GH) Regulatory Elements for ACOXL-AS1 Gene

Promoters and enhancers for ACOXL-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J111116 Enhancer 0.5 ENCODE 656.1 -1.0 -1031 0 NR2F1 IKZF1 ATF7 DPF2 IKZF2 ACOXL-AS1 BCL2L11 ACOXL MIR4435-2HG
GH02J111697 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -583.5 -583491 2.4 HDGF PKNOX1 CLOCK FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 E2F8 GC02M111609 ENSG00000285016 ANAPC1 RPS20P11 TMEM87B ACOXL-AS1 BCL2L11 GC02P113901
GH02J111700 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -589.0 -588955 8.2 ARNT ARID4B FEZF1 IRF4 ARID2 ZNF143 ATF7 FOS RUNX3 RXRA ACOXL-AS1 BCL2L11 GC02M111609 ENSG00000227842 GC02P113901 ANAPC1
GH02J111162 Enhancer 1.1 Ensembl ENCODE 10.8 -47.3 -47332 1.6 FOXA2 NCOA2 YY1 TCF12 ZNF766 ATF7 RUNX3 RXRA JUNB REST BCL2L11 ACOXL-AS1 GC02M111153 ENSG00000230499 MIR4435-2HG
GH02J111070 Enhancer 1 FANTOM5 Ensembl ENCODE 11.1 +43.7 43679 2.3 JUN MAX EBF1 MEF2B RELA JUND POLR2A IKZF1 FOSL2 IKZF2 ACOXL-AS1 BCL2L11 SMIM37 GC02M110971 ACOXL MIR4435-2HG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ACOXL-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ACOXL-AS1 Gene

Genomic Locations for ACOXL-AS1 Gene
chr2:111,098,341-111,115,588
(GRCh38/hg38)
Size:
17,248 bases
Orientation:
Minus strand
chr2:111,855,918-111,873,165
(GRCh37/hg19)

Genomic View for ACOXL-AS1 Gene

Genes around ACOXL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACOXL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACOXL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACOXL-AS1 Gene

Proteins for ACOXL-AS1 Gene

Post-translational modifications for ACOXL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACOXL-AS1 Gene

Domains & Families for ACOXL-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ACOXL-AS1 Gene

Function for ACOXL-AS1 Gene

Phenotypes From GWAS Catalog for ACOXL-AS1 Gene

Phenotypes for ACOXL-AS1 Gene

GenomeRNAi human phenotypes for ACOXL-AS1:
genes like me logo Genes that share phenotypes with ACOXL-AS1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACOXL-AS1 Gene

Localization for ACOXL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACOXL-AS1 Gene

Pathways & Interactions for ACOXL-AS1 Gene

SuperPathways for ACOXL-AS1 Gene

No Data Available

Interacting Proteins for ACOXL-AS1 Gene

Gene Ontology (GO) - Biological Process for ACOXL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ACOXL-AS1 Gene

Drugs & Compounds for ACOXL-AS1 Gene

No Compound Related Data Available

Transcripts for ACOXL-AS1 Gene

mRNA/cDNA for ACOXL-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ACOXL-AS1

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACOXL-AS1 Gene

No ASD Table

Relevant External Links for ACOXL-AS1 Gene

GeneLoc Exon Structure for
ACOXL-AS1
ECgene alternative splicing isoforms for
ACOXL-AS1

Expression for ACOXL-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACOXL-AS1 Gene

Orthologs for ACOXL-AS1 Gene

Evolution for ACOXL-AS1 Gene

ENSEMBL:
Gene Tree for ACOXL-AS1 (if available)
TreeFam:
Gene Tree for ACOXL-AS1 (if available)

No data available for Orthologs for ACOXL-AS1 Gene

Paralogs for ACOXL-AS1 Gene

No data available for Paralogs for ACOXL-AS1 Gene

Variants for ACOXL-AS1 Gene

Sequence variations from dbSNP and Humsavar for ACOXL-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000011771 -- 111,100,043(-) A/T non_coding_transcript_variant
rs1000017590 -- 111,099,129(-) A/G non_coding_transcript_variant
rs1000468062 -- 111,100,376(-) C/T non_coding_transcript_variant
rs1000564010 -- 111,107,548(-) G/T intron_variant
rs1000917537 -- 111,113,668(-) A/T intron_variant

Additional Variant Information for ACOXL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACOXL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ACOXL-AS1 Gene

Disorders for ACOXL-AS1 Gene

Additional Disease Information for ACOXL-AS1

No disorders were found for ACOXL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACOXL-AS1 Gene

Publications for ACOXL-AS1 Gene

  1. A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia. (PMID: 24292274) Speedy HE … Houlston RS (Nature genetics 2014) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ACOXL-AS1 Gene

Sources for ACOXL-AS1 Gene

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