Aliases for ACOXL-AS1 Gene

Subcategory (RNA class) for ACOXL-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ACOXL-AS1 Gene

  • ACOXL Antisense RNA 1 2 3 5
  • ACOXL-AS1 2 5 165
  • NONHSAG028936.2 91

External Ids for ACOXL-AS1 Gene

Summaries for ACOXL-AS1 Gene

GeneCards Summary for ACOXL-AS1 Gene

ACOXL-AS1 (ACOXL Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ACOXL-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ACOXL-AS1 Gene

Genomics for ACOXL-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ACOXL-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ACOXL-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ACOXL-AS1 Gene

Genomic Locations for ACOXL-AS1 Gene
chr2:111,098,341-111,121,463
(GRCh38/hg38)
Size:
23,123 bases
Orientation:
Minus strand
chr2:111,855,918-111,873,165
(GRCh37/hg19)
Size:
17,248 bases
Orientation:
Minus strand

Genomic View for ACOXL-AS1 Gene

Genes around ACOXL-AS1 on UCSC Golden Path with GeneCards custom track
ACOXL-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ACOXL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACOXL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACOXL-AS1 Gene

Proteins for ACOXL-AS1 Gene

Post-translational modifications for ACOXL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACOXL-AS1 Gene

Domains & Families for ACOXL-AS1 Gene

Gene Families for ACOXL-AS1 Gene

genes like me logo Genes that share domains with ACOXL-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ACOXL-AS1 Gene

Function for ACOXL-AS1 Gene

Phenotypes From GWAS Catalog for ACOXL-AS1 Gene

Phenotypes for ACOXL-AS1 Gene

GenomeRNAi human phenotypes for ACOXL-AS1:
genes like me logo Genes that share phenotypes with ACOXL-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACOXL-AS1 Gene

Localization for ACOXL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACOXL-AS1 Gene

Pathways & Interactions for ACOXL-AS1 Gene

PathCards logo

SuperPathways for ACOXL-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACOXL-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ACOXL-AS1 Gene

Drugs & Compounds for ACOXL-AS1 Gene

No Compound Related Data Available

Transcripts for ACOXL-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ACOXL-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075CC59_9606 lncRNA 3212 4

HGNC: 41112,

RefSeq: NR_122074,

LNCipedia: ACOXL-AS1:6,

NONCODE: NONHSAT185337.1,

URS000021822A_9606 lncRNA 453 3

Ensembl: ENST00000418615 (view in UCSC) ,

LNCipedia: ACOXL-AS1:5,

NONCODE: NONHSAT073612.2,

URS00003B4FF6_9606 lncRNA 3026 2

Ensembl: ENST00000376593 (view in UCSC) ,

LNCipedia: ACOXL-AS1:7,

URS0000EEFE3E_9606 lncRNA 2860 1

Ensembl: ENST00000670010 (view in UCSC) ,

URS00009BEAB4_9606 lncRNA 3881 1

NONCODE: NONHSAT185338.1,

ACOXL-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ACOXL-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ACOXL-AS1 Gene

No ASD Table

Relevant External Links for ACOXL-AS1 Gene

GeneLoc Exon Structure for
ACOXL-AS1

Expression for ACOXL-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ACOXL-AS1

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACOXL-AS1 Gene

Orthologs for ACOXL-AS1 Gene

Evolution for ACOXL-AS1 Gene

ENSEMBL:
Gene Tree for ACOXL-AS1 (if available)
TreeFam:
Gene Tree for ACOXL-AS1 (if available)

No data available for Orthologs for ACOXL-AS1 Gene

Paralogs for ACOXL-AS1 Gene

No data available for Paralogs for ACOXL-AS1 Gene

Variants for ACOXL-AS1 Gene

Additional dbSNP identifiers (rs#s) for ACOXL-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ACOXL-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4047n100 CNV loss 25217958
esv2666908 CNV deletion 23128226
esv3591977 CNV loss 21293372
nsv1149522 OTHER inversion 26484159
nsv521956 CNV loss 19592680
nsv582699 CNV loss 21841781
nsv834331 CNV loss 17160897

Additional Variant Information for ACOXL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACOXL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ACOXL-AS1 Gene

Disorders for ACOXL-AS1 Gene

No disorders were found for ACOXL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACOXL-AS1 Gene

Publications for ACOXL-AS1 Gene

  1. A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia. (PMID: 24292274) Speedy HE … Houlston RS (Nature genetics 2014) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for ACOXL-AS1 Gene

Sources for ACOXL-AS1 Gene