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Aliases for ACOT9 Gene

Aliases for ACOT9 Gene

  • Acyl-CoA Thioesterase 9 2 3 4 5
  • Acyl-CoA Thioester Hydrolase 9 3 4
  • Acyl-Coenzyme A Thioesterase 2, Mitochondrial 3
  • Acyl-Coenzyme A Thioesterase 9, Mitochondrial 3
  • Mitochondrial Acyl-CoA Thioesterase 3
  • EC 56
  • EC 3.1.2.- 4
  • MT-ACT48 3
  • EC 3.1.2 56
  • MTACT48 3
  • ACATE2 3
  • CGI-16 3

External Ids for ACOT9 Gene

Previous GeneCards Identifiers for ACOT9 Gene

  • GC0XM023480
  • GC0XM021460

Summaries for ACOT9 Gene

Entrez Gene Summary for ACOT9 Gene

  • The protein encoded by this gene is a mitochondrial acyl-CoA thioesterase of unknown function. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2010]

GeneCards Summary for ACOT9 Gene

ACOT9 (Acyl-CoA Thioesterase 9) is a Protein Coding gene. Diseases associated with ACOT9 include Kabuki Syndrome 1. Among its related pathways are Fatty Acyl-CoA Biosynthesis and Metabolism. Gene Ontology (GO) annotations related to this gene include carboxylic ester hydrolase activity and acetyl-CoA hydrolase activity.

UniProtKB/Swiss-Prot for ACOT9 Gene

  • Acyl-CoA thioesterases are a group of enzymes that catalyze the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Active on long chain acyl-CoAs.

Additional gene information for ACOT9 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACOT9 Gene

Genomics for ACOT9 Gene

GeneHancer (GH) Regulatory Elements for ACOT9 Gene

Promoters and enhancers for ACOT9 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI023741 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 557.1 +23.7 23690 2.7 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 POLR2B ZNF213 ZNF143 SP3 ACOT9 POLA1 RPL9P7 ZFX LOC105373148 PRDX4
GH0XI023766 Enhancer 0.7 Ensembl ENCODE 550.8 -0.5 -494 0.9 ZNF680 POLR2A ZBTB33 TRIM28 SETDB1 ACOT9 GC0XP023782 LOC105373148
GH0XI023764 Enhancer 0.5 ENCODE 557.7 +1.9 1859 1.2 HIC1 HNF1A RXRA HNF4A THRB YY1 ACOT9 LOC105373148 PRDX4
GH0XI023883 Enhancer 1.4 FANTOM5 Ensembl ENCODE 23.6 -117.7 -117684 2.2 HDGF PKNOX1 FEZF1 ZNF2 ZNF121 ZNF766 KLF7 FOS TSHZ1 ZNF592 SAT1 ACOT9 ENSG00000202272 LOC105373148 APOO EIF2S3 ZFX CXorf58 RPL9P7
GH0XI023896 Enhancer 1.4 FANTOM5 Ensembl ENCODE 22.8 -133.3 -133319 6 PKNOX1 ARID4B TCF12 GLIS2 ARID2 ZNF143 ATF7 FOS RXRA JUNB SAT1 ACOT9 LOC105373148 ENSG00000202272 ZFX APOO EIF2S3 CXorf58 RPL9P7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ACOT9 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ACOT9 gene promoter:

Genomic Locations for ACOT9 Gene

Genomic Locations for ACOT9 Gene
64,223 bases
Minus strand

Genomic View for ACOT9 Gene

Genes around ACOT9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACOT9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACOT9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACOT9 Gene

Proteins for ACOT9 Gene

  • Protein details for ACOT9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Acyl-coenzyme A thioesterase 9, mitochondrial
    Protein Accession:
    Secondary Accessions:
    • B3KNC9
    • B7ZM94

    Protein attributes for ACOT9 Gene

    439 amino acids
    Molecular mass:
    49902 Da
    Quaternary structure:
    • Interacts with NYAP1, NYAP2 and MYO16.

    Alternative splice isoforms for ACOT9 Gene


neXtProt entry for ACOT9 Gene

Selected DME Specific Peptides for ACOT9 Gene


Post-translational modifications for ACOT9 Gene

  • Ubiquitination at posLast=7373, Lys138, Lys250, and Lys272

Domains & Families for ACOT9 Gene

Gene Families for ACOT9 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ACOT9 Gene


Suggested Antigen Peptide Sequences for ACOT9 Gene

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the acyl coenzyme A hydrolase family.
  • Belongs to the acyl coenzyme A hydrolase family.
genes like me logo Genes that share domains with ACOT9: view

Function for ACOT9 Gene

Molecular function for ACOT9 Gene

UniProtKB/Swiss-Prot Function:
Acyl-CoA thioesterases are a group of enzymes that catalyze the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Active on long chain acyl-CoAs.

Enzyme Numbers (IUBMB) for ACOT9 Gene

Gene Ontology (GO) - Molecular Function for ACOT9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003986 acetyl-CoA hydrolase activity ISS --
GO:0016787 hydrolase activity IEA --
GO:0047617 acyl-CoA hydrolase activity TAS --
GO:0052689 carboxylic ester hydrolase activity IEA --
genes like me logo Genes that share ontologies with ACOT9: view
genes like me logo Genes that share phenotypes with ACOT9: view

Animal Model Products

CRISPR Products

miRNA for ACOT9 Gene

miRTarBase miRNAs that target ACOT9

Inhibitory RNA Products

No data available for Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ACOT9 Gene

Localization for ACOT9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ACOT9 Gene


Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ACOT9 gene
Compartment Confidence
mitochondrion 5
plasma membrane 2
nucleus 2
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Nucleoplasm (2)
  • Plasma membrane (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for ACOT9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion ISS --
GO:0005759 mitochondrial matrix TAS --
genes like me logo Genes that share ontologies with ACOT9: view

Pathways & Interactions for ACOT9 Gene

genes like me logo Genes that share pathways with ACOT9: view

Gene Ontology (GO) - Biological Process for ACOT9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006637 acyl-CoA metabolic process ISS,TAS --
genes like me logo Genes that share ontologies with ACOT9: view

No data available for SIGNOR curated interactions for ACOT9 Gene

Drugs & Compounds for ACOT9 Gene

(4) Drugs for ACOT9 Gene - From: HMDB and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Hexanoyl-CoA Experimental Pharma 0
Propanoyl-CoA Experimental Pharma 0

(33) Additional Compounds for ACOT9 Gene - From: HMDB and Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
  • (E)-S-2-decenoate
  • (E)-S-2-decenoate CoA
  • (E)-S-2-decenoate Coenzyme A
  • (E)-S-2-decenoic acid
  • 2-trans-Decenoyl-CoA
  • (2E)-Dodec-2-enoyl-CoA
  • (2E)-Dodec-2-enoyl-Coenzyme A
  • 2-trans-Dodecenoyl-CoA
  • 2-trans-Dodecenoyl-Coenzyme A
  • (2E)-Hexadecenoyl-CoA
  • (2E)-Hexadecenoyl-Coenzyme A
  • trans-2-Hexadecenoyl-CoA
  • trans-2-Hexadecenoyl-Coenzyme A
  • (E)-S-2-octenoate
  • (E)-S-2-octenoate CoA
  • (E)-S-2-octenoate Coenzyme A
  • (E)-S-2-octenoic acid
  • 2,3-trans-Octenoyl coenzyme A
  • (2E)-Tetradecenoyl-CoA
  • (2E)-Tetradecenoyl-Coenzyme A
  • Trans-tetra-dec-2-enoyl-CoA
  • Trans-tetra-dec-2-enoyl-CoA.
  • Trans-tetra-dec-2-enoyl-Coenzyme A
genes like me logo Genes that share compounds with ACOT9: view

Transcripts for ACOT9 Gene

Unigene Clusters for ACOT9 Gene

Acyl-CoA thioesterase 9:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACOT9 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b · 11c ^ 12 ^ 13 ^ 14 ^ 15 ^ 16
SP1: - - -
SP2: - -
SP3: - - - -
SP4: - - -
SP5: - - -

Relevant External Links for ACOT9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ACOT9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ACOT9 Gene

Protein differential expression in normal tissues from HIPED for ACOT9 Gene

This gene is overexpressed in Heart (7.8) and Peripheral blood mononuclear cells (7.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for ACOT9 Gene

Protein tissue co-expression partners for ACOT9 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ACOT9 Gene:


SOURCE GeneReport for Unigene cluster for ACOT9 Gene:


Evidence on tissue expression from TISSUES for ACOT9 Gene

  • Nervous system(4.4)
genes like me logo Genes that share expression patterns with ACOT9: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACOT9 Gene

Orthologs for ACOT9 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ACOT9 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ACOT9 33 34
  • 99.39 (n)
(Bos Taurus)
Mammalia ACOT9 33 34
  • 89.86 (n)
(Canis familiaris)
Mammalia ACOT9 33 34
  • 89.52 (n)
(Mus musculus)
Mammalia Acot9 33 16 34
  • 84.93 (n)
Acot10 34
  • 81 (a)
(Rattus norvegicus)
Mammalia Acot9 33
  • 84.17 (n)
(Ornithorhynchus anatinus)
Mammalia ACOT9 34
  • 74 (a)
(Monodelphis domestica)
Mammalia ACOT9 34
  • 64 (a)
(Gallus gallus)
Aves ACOT9 33 34
  • 73.47 (n)
(Anolis carolinensis)
Reptilia ACOT9 34
  • 68 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia acot9 33
  • 67.43 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.25975 33
(Danio rerio)
Actinopterygii acot9.2 33 34
  • 66.41 (n)
acot9.1 34
  • 61 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003848 33
  • 48.45 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG1635 33 34
  • 46.99 (n)
CG1638 34
  • 33 (a)
CG13771 34
  • 29 (a)
CG1774 34
  • 29 (a)
(Caenorhabditis elegans)
Secernentea T07D3.9 33 34
  • 46.8 (n)
F57F4.1 34
  • 29 (a)
T07D3.3 34
  • 26 (a)
T22B7.7 34
  • 25 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0C11385g 33
  • 45.9 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AER418C 33
  • 44.21 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G30720 33
  • 48.7 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2911 34
  • 44 (a)
Species where no ortholog for ACOT9 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ACOT9 Gene

Gene Tree for ACOT9 (if available)
Gene Tree for ACOT9 (if available)

Paralogs for ACOT9 Gene

No data available for Paralogs for ACOT9 Gene

Variants for ACOT9 Gene

Sequence variations from dbSNP and Humsavar for ACOT9 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
VAR_062668 A pancreatic ductal adenocarcinoma sample p.Asn305His
rs1000024758 -- 23,708,539(-) A/G intron_variant
rs1000096207 -- 23,710,245(-) G/A intron_variant
rs1000125044 -- 23,716,736(-) G/A intron_variant
rs1000156074 -- 23,716,304(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ACOT9 Gene

Variant ID Type Subtype PubMed ID
nsv478934 CNV novel sequence insertion 20440878
nsv470346 CNV gain 18288195
esv3576796 CNV gain 25503493
esv3573662 CNV loss 25503493
esv3573655 CNV loss 25503493
esv3573654 CNV loss 25503493
esv3573651 CNV loss 25503493
dgv2235e212 CNV loss 25503493
dgv2234e212 CNV loss 25503493
dgv2233e212 CNV loss 25503493

Variation tolerance for ACOT9 Gene

Residual Variation Intolerance Score: 72% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.08; 50.84% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ACOT9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ACOT9 Gene

Disorders for ACOT9 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ACOT9 Gene - From: DISEASES

Disorder Aliases PubMed IDs
kabuki syndrome 1
  • kms
- elite association - COSMIC cancer census association via MalaCards
Search ACOT9 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for ACOT9

genes like me logo Genes that share disorders with ACOT9: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ACOT9 Gene

Publications for ACOT9 Gene

  1. Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PMID: 10810093) Lai CH … Lin W (Genome research 2000) 2 3 4 58
  2. Molecular cloning and characterization of MT-ACT48, a novel mitochondrial acyl-CoA thioesterase. (PMID: 10383425) Poupon V … Benmerah A (The Journal of biological chemistry 1999) 2 3 22 58
  3. A revised nomenclature for mammalian acyl-CoA thioesterases/hydrolases. (PMID: 16103133) Hunt MC … Alexson SE (Journal of lipid research 2005) 2 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  5. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58

Products for ACOT9 Gene

Sources for ACOT9 Gene

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