ACCS Gene (Protein Coding)

1-Aminocyclopropane-1-Carboxylate Synthase Homolog (Inactive)

GC11P044045
GIFtS:
38
See more...

Aliases for ACCS Gene

Aliases for ACCS Gene

  • 1-Aminocyclopropane-1-Carboxylate Synthase Homolog (Inactive) 2 3 5
  • PHACS 2 3 4
  • 1-Aminocyclopropane-1-Carboxylate Synthase-Like Protein 1 3 4
  • ACC Synthase-Like Protein 1 3 4
  • ACS 2 3
  • 1-Aminocyclopropane-1-Carboxylate Synthase-Like Protein (Non-Functional) Isoform 1 3
  • 1-Aminocyclopropane-1-Carboxylate Synthase-Like Protein (Non-Functional) Isoform 2 3
  • 1-Aminocyclopropane-1-Carboxylate Synthase-Like Protein (Non-Functional) Isoform 4 3
  • 1-Aminocyclopropane-1-Carboxylate Synthase Homolog (Arabidopsis)(Non-Functional) 2
  • ACCS 5

External Ids for ACCS Gene

Previous GeneCards Identifiers for ACCS Gene

  • GC11P043796

Summaries for ACCS Gene

GeneCards Summary for ACCS Gene

ACCS (1-Aminocyclopropane-1-Carboxylate Synthase Homolog (Inactive)) is a Protein Coding gene. Diseases associated with ACCS include Pancreatic Acinar Cell Adenocarcinoma and Lung Adenoid Cystic Carcinoma. Gene Ontology (GO) annotations related to this gene include protein homodimerization activity and 1-aminocyclopropane-1-carboxylate synthase activity. An important paralog of this gene is ACCSL.

UniProtKB/Swiss-Prot Summary for ACCS Gene

  • Does not catalyze the synthesis of 1-aminocyclopropane-1-carboxylate but is capable of catalyzing the deamination of L-vinylglycine.

Additional gene information for ACCS Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ACCS Gene

Genomics for ACCS Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ACCS Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J044065 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 667.7 +0.4 435 2.3 BRCA1 ARHGAP35 HNRNPL CTCF PRDM10 REST LEF1 IKZF1 POLR2A BACH1 ACCS EXT2 C11orf96 ALKBH3-AS1 ENSG00000255165
GH11J044063 Enhancer 0.2 Ensembl 635.8 -1.5 -1524 0.8 ACCS EXT2 C11orf96 ALKBH3-AS1 ACCSL
GH11J044095 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 29.4 +30.3 30301 2.4 CTCF IKZF1 BACH1 JUND FOXA1 LARP7 ZNF143 ZIC2 RBFOX2 POLR2A EXT2 ACCS ALKBH3 piR-35674-066 ALX4
GH11J043357 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 16.3 -706.4 -706368 3.3 HNRNPL PRDM10 ZNF629 REST SIX5 NFKBIZ ZNF692 POLR2A NFRKB BACH1 TTC17 SEC14L1P1 ENSG00000254907 ACCS EXT2 ENSG00000255165 ALKBH3 RN7SKP287 ENSG00000246250 API5
GH11J044241 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 25.4 +178.9 178935 6.7 GATAD2A TEAD4 KDM1A RCOR2 RXRB ZNF24 POLR2A SOX13 ETS1 SP1 ACCS EXT2 piR-42491-029 piR-53854 ALX4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ACCS on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for ACCS

Top Transcription factor binding sites by QIAGEN in the ACCS gene promoter:
  • AhR
  • AML1a
  • Arnt
  • Elk-1
  • STAT3

Genomic Locations for ACCS Gene

Genomic Locations for ACCS Gene
chr11:44,065,925-44,084,237
(GRCh38/hg38)
Size:
18,313 bases
Orientation:
Plus strand
chr11:44,087,475-44,105,772
(GRCh37/hg19)
Size:
18,298 bases
Orientation:
Plus strand

Genomic View for ACCS Gene

Genes around ACCS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACCS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACCS Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for ACCS Gene

Proteins for ACCS Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for ACCS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96QU6-1A1L1_HUMAN
    Recommended name:
    1-aminocyclopropane-1-carboxylate synthase-like protein 1
    Protein Accession:
    Q96QU6
    Secondary Accessions:
    • B4E219
    • Q8WUL4
    • Q96LX5

    Protein attributes for ACCS Gene

    Size:
    501 amino acids
    Molecular mass:
    57324 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ACCS Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ACCS Gene

Protein Expression for ACCS Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for ACCS Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ACCS Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • Abcam antibodies for ACCS
  • Boster Bio Antibodies for ACCS
  • Santa Cruz Biotechnology (SCBT) Antibodies for ACCS

No data available for DME Specific Peptides for ACCS Gene

Domains & Families for ACCS Gene

Gene Families for ACCS Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ACCS Gene

InterPro:
Blocks:
  • Aminotransferase, class I and II
  • Aromatic amino acid beta-eliminating lyase/threonine aldolase
ProtoNet:

Suggested Antigen Peptide Sequences for ACCS Gene

GenScript: Design optimal peptide antigens:
  • 1-aminocyclopropane-1-carboxylate synthase-like protein 1 (1A1L1_HUMAN)
  • cDNA FLJ58889, highly similar to Homo sapiens 1-aminocyclopropane-1-carboxylate synthase (PHACS), mRNA (B4E219_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q96QU6

UniProtKB/Swiss-Prot:

1A1L1_HUMAN :
  • Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.
Family:
  • Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.
genes like me logo Genes that share domains with ACCS: view

Function for ACCS Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for ACCS Gene

UniProtKB/Swiss-Prot Function:
Does not catalyze the synthesis of 1-aminocyclopropane-1-carboxylate but is capable of catalyzing the deamination of L-vinylglycine.

Phenotypes From GWAS Catalog for ACCS Gene

Gene Ontology (GO) - Molecular Function for ACCS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003824 catalytic activity IEA --
GO:0005515 protein binding IPI 25416956
GO:0016847 NOT 1-aminocyclopropane-1-carboxylate synthase activity IDA 11470512
GO:0030170 pyridoxal phosphate binding NAS 11470512
GO:0042802 identical protein binding IPI 16189514
genes like me logo Genes that share ontologies with ACCS: view
genes like me logo Genes that share phenotypes with ACCS: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ACCS

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACCS Gene

Localization for ACCS Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ACCS gene
Compartment Confidence
nucleus 3
cytosol 3
plasma membrane 2
extracellular 2
cytoskeleton 2
mitochondrion 2
golgi apparatus 2
peroxisome 1
endoplasmic reticulum 1
endosome 1
lysosome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (2)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ACCS Gene

Pathways & Interactions for ACCS Gene

PathCards logo

SuperPathways for ACCS Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACCS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0009058 biosynthetic process IEA --
GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process IEA --
genes like me logo Genes that share ontologies with ACCS: view

No data available for Pathways by source and SIGNOR curated interactions for ACCS Gene

Drugs & Compounds for ACCS Gene

Products:

  1. Drug

(5) Drugs for ACCS Gene - From: DrugBank, ClinicalTrials, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Vinylglycine Experimental Pharma Target 0
Cola Pharma 2481
Pharmaceutical Solutions Pharma 11855

(7) Additional Compounds for ACCS Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with ACCS: view

Transcripts for ACCS Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ACCS Gene

2 REFSEQ mRNAs :
13 NCBI additional mRNA sequence :
13 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ACCS

Alternative Splicing Database (ASD) splice patterns (SP) for ACCS Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b · 18c
SP1: - - - -
SP2: - - -
SP3: - -
SP4: -
SP5:
SP6: - -
SP7: - - -
SP8:

Relevant External Links for ACCS Gene

GeneLoc Exon Structure for
ACCS

Expression for ACCS Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ACCS Gene

mRNA expression in normal human tissues for ACCS Gene
mRNA expression by GTEx for ACCS GenemRNA expression by BioGPS for ACCS Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

  • Spleen (Hematopoietic System)

Protein differential expression in normal tissues from HIPED for ACCS Gene

This gene is overexpressed in Adipocyte (42.5), Skin (20.3), and CD4 Tcells (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for ACCS Gene



Protein tissue co-expression partners for ACCS Gene

- Elite partner

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ACCS

SOURCE GeneReport for Unigene cluster for ACCS Gene:

Hs.126706

Evidence on tissue expression from TISSUES for ACCS Gene

  • Kidney(3.7)
  • Adrenal gland(3.3)
  • Nervous system(3)
  • Skin(2.8)
  • Lymph node(2.6)
  • Liver(2.3)
  • Blood(2.2)
  • Thyroid gland(2.2)
  • Intestine(2.2)
  • Pancreas(2.2)
  • Lung(2.2)
  • Muscle(2.1)
  • Spleen(2.1)
genes like me logo Genes that share expression patterns with ACCS: view

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACCS Gene

Orthologs for ACCS Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ACCS Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia ACCS 30 31
  • 99.27 (n)
 OneToOne
Dog
(Canis familiaris)
 Mammalia ACCS 30 31
  • 88.04 (n)
 OneToOne
Cow
(Bos Taurus)
 Mammalia ACCS 30
  • 86.89 (n)
ACS 31
  • 75 (a)
 OneToOne
Rat
(Rattus norvegicus)
 Mammalia Accs 30
  • 85.96 (n)
Mouse
(Mus musculus)
 Mammalia Accs 30 17 31
  • 84.24 (n)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia ACCS 31
  • 71 (a)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia ACCS 31
  • 63 (a)
 OneToOne
Chicken
(Gallus gallus)
 Aves ACCS 30
  • 67.02 (n)
-- 31
  • 56 (a)
 OneToMany
Lizard
(Anolis carolinensis)
 Reptilia -- 31
  • 58 (a)
 OneToMany
Tropical Clawed Frog
(Silurana tropicalis)
 Amphibia accs 30
  • 66.13 (n)
Str.4277 30
Zebrafish
(Danio rerio)
 Actinopterygii accs 30 31
  • 60.7 (n)
 OneToMany
Worm
(Caenorhabditis elegans)
 Secernentea T04F3.1 31
  • 4 (a)
 OneToMany
Thale Cress
(Arabidopsis thaliana)
 eudicotyledons ACS9 30
  • 45.9 (n)
Rice
(Oryza sativa)
 Liliopsida Os03g0727600 30
  • 47.53 (n)
Species where no ortholog for ACCS was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)

Evolution for ACCS Gene

ENSEMBL:
Gene Tree for ACCS (if available)
TreeFam:
Gene Tree for ACCS (if available)
Aminode:
Evolutionary constrained regions (ECRs) for ACCS: view image

Paralogs for ACCS Gene

Paralogs for ACCS Gene

(1) SIMAP similar genes for ACCS Gene using alignment to 4 proteins:

  • 1A1L1_HUMAN
  • B4E219_HUMAN
  • E9PRT9_HUMAN
  • E9PS61_HUMAN
genes like me logo Genes that share paralogs with ACCS: view

Variants for ACCS Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ACCS Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
709994 Benign: not provided 44,077,328(+) G/A SYNONYMOUS_VARIANT
710006 Benign: not provided 44,083,751(+) C/T MISSENSE_VARIANT
712076 Benign: not provided 44,077,852(+) G/A MISSENSE_VARIANT
715960 Benign: not provided 44,081,244(+) C/T SYNONYMOUS_VARIANT
rs35514614 A breast cancer sample p.Gly221Glu

Additional dbSNP identifiers (rs#s) for ACCS Gene

Structural Variations from Database of Genomic Variants (DGV) for ACCS Gene

Variant ID Type Subtype PubMed ID
esv995967 CNV insertion 20482838
nsv1043523 CNV gain 25217958
nsv523327 CNV gain 19592680
nsv832139 CNV loss 17160897

Variation tolerance for ACCS Gene

Residual Variation Intolerance Score: 83.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.92; 93.57% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ACCS Gene

Human Gene Mutation Database (HGMD)
ACCS
SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACCS

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ACCS Gene

Disorders for ACCS Gene

MalaCards: The human disease database

(33) MalaCards diseases for ACCS Gene - From: DISEASES

Disorder Aliases PubMed IDs
pancreatic acinar cell adenocarcinoma
  • pancreatic acinar cell carcinoma
lung adenoid cystic carcinoma
  • adenoid cystic carcinoma of lung
tracheal cancer
  • pancoast tumor
trachea adenoid cystic carcinoma
  • tracheal adenoid cystic carcinoma
trachea carcinoma
  • carcinoma of the trachea
- elite association - COSMIC cancer census association via MalaCards
Search ACCS in MalaCards View complete list of genes associated with diseases

Additional Disease Information for ACCS

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
genes like me logo Genes that share disorders with ACCS: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ACCS Gene

Publications for ACCS Gene

  1. The human cDNA for a homologue of the plant enzyme 1-aminocyclopropane-1-carboxylate synthase encodes a protein lacking that activity. (PMID: 11470512) Koch KA … Kirsch JF (Gene 2001) 2 3 4 23
  2. A Large-scale genetic association study of esophageal adenocarcinoma risk. (PMID: 20453000) Liu CY … Christiani DC (Carcinogenesis 2010) 3 41
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  4. A reference map of the human binary protein interactome. (PMID: 32296183) Luck K … Calderwood MA (Nature 2020) 3
  5. Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations. (PMID: 31515488) Fragoza R … Yu H (Nature communications 2019) 3

ExternalLinks

View latest publications for ACCS gene in Mastermind

Products for ACCS Gene

Sources for ACCS Gene